Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2927 203 2e-46 seq2939 138 9e-27 seq2953 109 4e-18 seq2959 95.1 9e-14 >seq2927 Length=4912583 Score = 203 bits (224), Expect = 2e-46 Identities = 734/1126 (65%), Gaps = 28/1126 (2%) Strand=Plus/Minus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 |||||||||| || | || || || ||||||||||| || || || || | ||||||| Sbjct 2842704 TACCATTGGCGTCGATGTCGAAGGTAACTTCAATTTGCGGTACGCCCCTAGGCGCAGGTG 2842645 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || || | |||| | || || | || || || || || | || || | Sbjct 2842644 GTATTCCCGTCAGCTCAAATTTACCAAGGATGTTGTTGTCCTTGGTCATCGCTCTCTCTC 2842585 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG- 517453 ||||| | | ||| ||| ||| | | ||||| || ||||| || ||||| |||| Sbjct 2842584 CCTCGTAGACTTGAATAAGTACTCCCGGCTGATTGTCGGAATACGTGGTAAA-CGTCTGC 2842526 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || || || || ||||| || | || | | ||||||| | ||| || || Sbjct 2842525 GTCTGCTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAAGTGGTCATGACACCGCCAGCC 2842466 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | || || || || ||||| || || | || | | || ||||| | |||| Sbjct 2842465 GTCTCAATGCCCAGCGACAGCGGAGTCACGTCCAGCAGAAGCAGATCTTGAACCTCTTCA 2842406 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | || ||||||||||| |||| || || || || |||||||| || || Sbjct 2842405 GACTTGTCGCCGTGCAGAATAGCTGCCTGAACCGCTGCGCCGTAGGCAACAGCCTCGTCC 2842346 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TAC 517692 ||||| | | || ||| |||| || || ||||| |||| | ||| || | ||| | Sbjct 2842345 GGATTGATGGATTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGAAGCAGCT-TCTGAAT 2842287 Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAAT-TTCATGCACCTGTGATTTATCCA 517751 ||| || || | | || || || |||| || || | || || |||| || |||| Sbjct 2842286 CTTTGGTATCCTGGTAGAGCCACCGACTAGAACTATGCTTGTGTACTTGTGCCTTGTCCA 2842227 Query 517752 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC 517811 || | ||| | |||| || || ||||| || ||| |||| || | | Sbjct 2842226 TCTTCGCGTCCCTCAGCGCTTTCTCCACAGGTTCGAGGGTGCTTCTGAACATATCGGCGC 2842167 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 517869 | ||||| || ||| | || ||||| || ||| | || || || || || ||||||| Sbjct 2842166 AGAGTTCCTCAAATCTGGCCCTAGT--GATGGACGTGTAGAAGTCGATACCCTCGAACAG 2842109 Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 || |||| ||||| | | || ||||| || | || | ||| || | || || Sbjct 2842108 CGAGTCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAATGTTCTTTTCGCCCTCTCGCA 2842049 Query 517930 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTT 517987 || ||||| || | || | |||| | || ||| | |||| || |||| || || Sbjct 2842048 GGCCGTCCTCAGGCGTCTCAGGGCTCT--CTTGTTGGTGCTCAAGTCCTTTTTGTACTTC 2841991 Query 517988 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 518047 |||||||| |||| ||| | | || | ||||| ||||| || || || || | Sbjct 2841990 CTCTTGAATTCTTGCACAAAGTGATTCACCATTCGATTGTCAAAGTCCTCTCCGCCGAGA 2841931 Query 518048 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTT 518107 | || | || | ||||| | | || | || | || ||||||| | || | | Sbjct 2841930 TGCGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCTTCAATTGTCAGGATCGAC 2841871 Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGTT 518166 |||||| ||| || ||||||| || || || || || ||| ||| | | || ||| Sbjct 2841870 ACATCAAAGGTACCTCCACCCAAGTCGAAGATCAGGACGTTC--TTC-TCGCCTGAAGTT 2841814 Query 518167 T--TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 | ||||| ||||| ||||| | ||||| || || || || || || || || | |||| Sbjct 2841813 TTCTTATCGAGACCGTACGCTATCGCAGCTGCCGTCGGCTCGTTTATTATCCTGAGAACA 2841754 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | ||| || || || || || || || ||||| || || ||||| || ||||| Sbjct 2841753 TTCAAACCGGCGATAGCGCCGGCGTCCTTCGTCGCTTGCCTCTGAGAATCATTGAAATAA 2841694 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCA-ATATAAGCGCTT--GCCGT 518340 || || ||||| || ||||| | || || |||| ||| |||| |||| ||||| Sbjct 2841693 GCTGGTACAGTGATGACGGCGTTCGTAACAGTCTTGCCCAGATAT----GCTTCCGCCGT 2841638 Query 518341 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 || ||||| || | |||| ||| || || | | ||| |||||| Sbjct 2841637 TTCCTTCATCTTCGTCAAAACCATAGAGGACACCTCTTC-GGGGAA 2841593 >seq2939 Length=1430158 Score = 138 bits (152), Expect = 9e-27 Identities = 139/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 870790 AAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACA 870849 ||||||| | ||||| |||| ||| ||| ||| ||||||| ||||||||| | ||||| Sbjct 977501 AAAGAAAGTGATTGTGGATTTTTCGAGTCCCAATGTTGCTAAGGAAATGCATGTAGGACA 977442 Query 870850 TTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACG 870908 ||||||||| ||||| ||||| || ||||| |||| | |||||| | | | || |||| Sbjct 977441 TTTAAGATCGACTATAATTGGAGAGAGTATTTCTAGGCTTTTAGAA-TATTTAGAGCACG 977383 Query 870909 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||| | | | |||||||| ||||||||||| || || || ||||||||||| || Sbjct 977382 ATGTGTTAAGACTCAATCATGTAGGTGATTGGGGCACACAGTTTGGTATGTTAATAGC 977325 >seq2953 Length=635362 Score = 109 bits (120), Expect = 4e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | || || |||| ||||| || |||||||| ||||| | Sbjct 617532 TTTATCTTCCTGTTTATCCATGCCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 617473 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 || | || || | |||| ||| || |||||||| |||||||||| ||| ||||| Sbjct 617472 TCGAAGCACGTTCAATCCAGAAATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATC 617413 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 ||||||||| || || ||||||||||| |||| | ||| || | ||||| Sbjct 617412 GTTAAAATACGCTGGTACAGTAATAACCGCATTTTTCACTGAAGTATTTAAGTAAGCCGC 617353 Query 518335 TGCCGTTTGTTTCATTTT 518352 ||| |||| ||||||||| Sbjct 617352 TGCTGTTTCTTTCATTTT 617335 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 ||||||||||| || ||||| |||||||| ||||||| | ||| || | || || | | Sbjct 617510 CCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACTCGAAGCACGTTCAATCCAGAA 617451 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | ||| ||| || ||||||| || | || |||||||| |||||||||||| Sbjct 617450 ATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATCGTTAAAATACGCTGGTACAGTA 617391 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 617390 ATAACCGCATTTTT 617377 >seq2959 Length=3411269 Score = 95.1 bits (104), Expect = 9e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498 |||||||| ||||| || || | || ||| ||||| ||| || |||||| | || || Sbjct 2912293 ATTTCTGTGTGGAACAACGGGAAGGGCATTCCTGTAGTAATACACAAAGAAGAAAAAATG 2912352 Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 634558 | ||||| | |||||||| || | ||| | || || ||||||||||| | | ||| Sbjct 2912353 TATGTACCCACCATGATTTTCGGTCACCTTCTGACATCATCTAATTACGATGACGAAGAG 2912412 Query 634559 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610 |||||| |||||| | |||||||| || || ||||| |||||||| Sbjct 2912413 GAAAAAGTGACTGGTGGCAGAAATGGTTACGGTGCCAAGCTGTGTAATATTT 2912464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780672041419180