Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq2927 203 2e-46
seq2939 138 9e-27
seq2953 109 4e-18
seq2959 95.1 9e-14
>seq2927
Length=4912583
Score = 203 bits (224), Expect = 2e-46
Identities = 734/1126 (65%), Gaps = 28/1126 (2%)
Strand=Plus/Minus
Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334
|||||||||| || | || || || ||||||||||| || || || || | |||||||
Sbjct 2842704 TACCATTGGCGTCGATGTCGAAGGTAACTTCAATTTGCGGTACGCCCCTAGGCGCAGGTG 2842645
Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394
| || || || | |||| | || || | || || || || || | || || |
Sbjct 2842644 GTATTCCCGTCAGCTCAAATTTACCAAGGATGTTGTTGTCCTTGGTCATCGCTCTCTCTC 2842585
Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG- 517453
||||| | | ||| ||| ||| | | ||||| || ||||| || ||||| ||||
Sbjct 2842584 CCTCGTAGACTTGAATAAGTACTCCCGGCTGATTGTCGGAATACGTGGTAAA-CGTCTGC 2842526
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
| | || || || || ||||| || | || | | ||||||| | ||| || ||
Sbjct 2842525 GTCTGCTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAAGTGGTCATGACACCGCCAGCC 2842466
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573
|| || | || || || || ||||| || || | || | | || ||||| | ||||
Sbjct 2842465 GTCTCAATGCCCAGCGACAGCGGAGTCACGTCCAGCAGAAGCAGATCTTGAACCTCTTCA 2842406
Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633
| | || ||||||||||| |||| || || || || |||||||| || ||
Sbjct 2842405 GACTTGTCGCCGTGCAGAATAGCTGCCTGAACCGCTGCGCCGTAGGCAACAGCCTCGTCC 2842346
Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TAC 517692
||||| | | || ||| |||| || || ||||| |||| | ||| || | ||| |
Sbjct 2842345 GGATTGATGGATTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGAAGCAGCT-TCTGAAT 2842287
Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAAT-TTCATGCACCTGTGATTTATCCA 517751
||| || || | | || || || |||| || || | || || |||| || ||||
Sbjct 2842286 CTTTGGTATCCTGGTAGAGCCACCGACTAGAACTATGCTTGTGTACTTGTGCCTTGTCCA 2842227
Query 517752 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC 517811
|| | ||| | |||| || || ||||| || ||| |||| || | |
Sbjct 2842226 TCTTCGCGTCCCTCAGCGCTTTCTCCACAGGTTCGAGGGTGCTTCTGAACATATCGGCGC 2842167
Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 517869
| ||||| || ||| | || ||||| || ||| | || || || || || |||||||
Sbjct 2842166 AGAGTTCCTCAAATCTGGCCCTAGT--GATGGACGTGTAGAAGTCGATACCCTCGAACAG 2842109
Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929
|| |||| ||||| | | || ||||| || | || | ||| || | || ||
Sbjct 2842108 CGAGTCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAATGTTCTTTTCGCCCTCTCGCA 2842049
Query 517930 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTT 517987
|| ||||| || | || | |||| | || ||| | |||| || |||| || ||
Sbjct 2842048 GGCCGTCCTCAGGCGTCTCAGGGCTCT--CTTGTTGGTGCTCAAGTCCTTTTTGTACTTC 2841991
Query 517988 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 518047
|||||||| |||| ||| | | || | ||||| ||||| || || || || |
Sbjct 2841990 CTCTTGAATTCTTGCACAAAGTGATTCACCATTCGATTGTCAAAGTCCTCTCCGCCGAGA 2841931
Query 518048 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTT 518107
| || | || | ||||| | | || | || | || ||||||| | || | |
Sbjct 2841930 TGCGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCTTCAATTGTCAGGATCGAC 2841871
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGTT 518166
|||||| ||| || ||||||| || || || || || ||| ||| | | || |||
Sbjct 2841870 ACATCAAAGGTACCTCCACCCAAGTCGAAGATCAGGACGTTC--TTC-TCGCCTGAAGTT 2841814
Query 518167 T--TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
| ||||| ||||| ||||| | ||||| || || || || || || || || | ||||
Sbjct 2841813 TTCTTATCGAGACCGTACGCTATCGCAGCTGCCGTCGGCTCGTTTATTATCCTGAGAACA 2841754
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| | ||| || || || || || || || ||||| || || ||||| || |||||
Sbjct 2841753 TTCAAACCGGCGATAGCGCCGGCGTCCTTCGTCGCTTGCCTCTGAGAATCATTGAAATAA 2841694
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCA-ATATAAGCGCTT--GCCGT 518340
|| || ||||| || ||||| | || || |||| ||| |||| |||| |||||
Sbjct 2841693 GCTGGTACAGTGATGACGGCGTTCGTAACAGTCTTGCCCAGATAT----GCTTCCGCCGT 2841638
Query 518341 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386
|| ||||| || | |||| ||| || || | | ||| ||||||
Sbjct 2841637 TTCCTTCATCTTCGTCAAAACCATAGAGGACACCTCTTC-GGGGAA 2841593
>seq2939
Length=1430158
Score = 138 bits (152), Expect = 9e-27
Identities = 139/178 (78%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 870790 AAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACA 870849
||||||| | ||||| |||| ||| ||| ||| ||||||| ||||||||| | |||||
Sbjct 977501 AAAGAAAGTGATTGTGGATTTTTCGAGTCCCAATGTTGCTAAGGAAATGCATGTAGGACA 977442
Query 870850 TTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACG 870908
||||||||| ||||| ||||| || ||||| |||| | |||||| | | | || ||||
Sbjct 977441 TTTAAGATCGACTATAATTGGAGAGAGTATTTCTAGGCTTTTAGAA-TATTTAGAGCACG 977383
Query 870909 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966
|||| | | | |||||||| ||||||||||| || || || ||||||||||| ||
Sbjct 977382 ATGTGTTAAGACTCAATCATGTAGGTGATTGGGGCACACAGTTTGGTATGTTAATAGC 977325
>seq2953
Length=635362
Score = 109 bits (120), Expect = 4e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214
||| |||| | |||||| | || || |||| ||||| || |||||||| ||||| |
Sbjct 617532 TTTATCTTCCTGTTTATCCATGCCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 617473
Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274
|| | || || | |||| ||| || |||||||| |||||||||| ||| |||||
Sbjct 617472 TCGAAGCACGTTCAATCCAGAAATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATC 617413
Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334
||||||||| || || ||||||||||| |||| | ||| || | |||||
Sbjct 617412 GTTAAAATACGCTGGTACAGTAATAACCGCATTTTTCACTGAAGTATTTAAGTAAGCCGC 617353
Query 518335 TGCCGTTTGTTTCATTTT 518352
||| |||| |||||||||
Sbjct 617352 TGCTGTTTCTTTCATTTT 617335
Score = 89.7 bits (98), Expect = 4e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303
||||||||||| || ||||| |||||||| ||||||| | ||| || | || || | |
Sbjct 617510 CCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACTCGAAGCACGTTCAATCCAGAA 617451
Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363
|| | ||| ||| || ||||||| || | || |||||||| ||||||||||||
Sbjct 617450 ATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATCGTTAAAATACGCTGGTACAGTA 617391
Query 322364 ATAACTGCTTTATT 322377
||||| || || ||
Sbjct 617390 ATAACCGCATTTTT 617377
>seq2959
Length=3411269
Score = 95.1 bits (104), Expect = 9e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498
|||||||| ||||| || || | || ||| ||||| ||| || |||||| | || ||
Sbjct 2912293 ATTTCTGTGTGGAACAACGGGAAGGGCATTCCTGTAGTAATACACAAAGAAGAAAAAATG 2912352
Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 634558
| ||||| | |||||||| || | ||| | || || ||||||||||| | | |||
Sbjct 2912353 TATGTACCCACCATGATTTTCGGTCACCTTCTGACATCATCTAATTACGATGACGAAGAG 2912412
Query 634559 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610
|||||| |||||| | |||||||| || || ||||| ||||||||
Sbjct 2912413 GAAAAAGTGACTGGTGGCAGAAATGGTTACGGTGCCAAGCTGTGTAATATTT 2912464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780672041419180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |