Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2927 271 1e-67 seq2507 201 1e-46 seq2581 95.1 2e-14 seq2953 84.2 3e-11 seq2378 84.2 3e-11 >seq2927 Length=4912583 Score = 271 bits (300), Expect = 1e-67 Identities = 729/1108 (66%), Gaps = 5/1108 (0%) Strand=Plus/Minus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| || || | ||||| | || | |||||| ||| ||||| || || | || Sbjct 2842704 TACCATTGGCGTCGATGTCGAAGGTAACTTCAATTTGCGGTACGCCCCTAGGCGCAGGTG 2842645 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 | || ||||| | |||||| ||||||| | |||| ||| | | | || | || | Sbjct 2842644 GTATTCCCGTCAGCTCAAATTTACCAAGGATGTTGTTGTCCTTGGTCATCGCTCTCTCTC 2842585 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTT 6884 | || ||||||| ||| || | || ||||| || ||| | || | || Sbjct 2842584 CCTCGTAGACTTGAATAAGTACTCCCGGCTGATTGTCGGAATACGTGGTAAACGTCTGCG 2842525 Query 6885 CTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAG 6944 | ||| | || ||||| || || ||| || | | |||||| | ||| || | Sbjct 2842524 TCTGCTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAAGTGGTCATGACACCGCCAGCCG 2842465 Query 6945 TTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGT 7004 | || | || || ||||| || |||||||||| || | ||| |||||||| ||| Sbjct 2842464 TCTCAATGCCCAGCGACAGCGGAGTCACGTCCAGCAGAAGCAGATCTTGAACCTCTTCAG 2842405 Query 7005 TCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 | || || || ||| | || || || |||| || ||||| || || ||||| || Sbjct 2842404 ACTTGTCGCC-GTGCAGAATAGCTGCCTGAACCGCTGCGCCGTAGGCAACAGCCTCGTCC 2842346 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123 || || || | |||||||||||| || ||||| || |||| | || | ||||| Sbjct 2842345 GGATTGATGGATTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGAAGCAGCTTCTGAATC 2842286 Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATT-TCATTCACTTTCGATTTATCGAT 7182 || || || | || || |||||||| | ||| || | | |||| | || || || Sbjct 2842285 TTTGGTATCCTGGTAGAGCCACCGACTAGAACTATGCTTGTGTACTTGTGCCTTGTCCAT 2842226 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 ||| | ||| | || | ||| || |||||||| | | | ||||| || || Sbjct 2842225 CTTCGCGTCCCTCAGCGCTTTCTCCACAGGTTCGAGGGTGCTTCTGAACATATCGGCGCA 2842166 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||||||||||| | || | || ||||| || ||||| || | || ||| | | ||| Sbjct 2842165 GAGTTCCTCAAATCTGGCCCTAGTGATGGACGTGTAGAAGTCGATACCCTCGAACAGCGA 2842106 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||| |||||| | | || | || ||| || |||| || || | ||| || || Sbjct 2842105 GTCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAATGTTCTTTTCGCCCTCTCGCAGGC 2842046 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 ||| | | || | ||||| | | ||| | | || || || | || | || Sbjct 2842045 CGTCCTCAGGCGTCTCAGGGCTCTCTTGTTGGTGCTCAAGTCCTTTTTGTACTTCCTCTT 2841986 Query 7423 AAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || |||| || | ||||| | | || || || || || || || | || | Sbjct 2841985 GAATTCTTGCACA-AAGTGATTCACCATTCGATTGTCAAAGTCCTCTCCGCCGAGATGCG 2841927 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || | ||| || |||||||| || ||||||| | | | ||| |||| Sbjct 2841926 TGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCTTCAATTGTCAGGATCGACACAT 2841867 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTAT 7601 |||| ||||| ||||||| ||| || || || |||||| | ||| | | ||||||| Sbjct 2841866 CAAAGGTACCTCCACCCAAGTCGAAGATCAGGACGTTCTTCTCGCCTGAAGTTTTCTTAT 2841807 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661 ||||||||||||| || || || ||||| || || || || || | ||| |||| | Sbjct 2841806 CGAGACCGTACGCTATCGCAGCTGCCGTCGGCTCGTTTATTATCCTGAGAACATTCAAAC 2841747 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | || |||| | || || ||||||||||| | || ||||| || || || || || | Sbjct 2841746 CGGCGATAGCGCCGGCGTCCTTCGTCGCTTGCCTCTGAGAATCATTGAAATAAGCTGGTA 2841687 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | ||| |||| ||| || |||| || ||||| | |||||| | || ||||| | Sbjct 2841686 CAGTGATGACGGCGTTCGTAACAGTCTTGCCCAGATATGCTTCCGCCGTTTCCTTCATCT 2841627 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTC 7809 | || | |||||| || || | |||||| Sbjct 2841626 TCGTCAAAACCATAGAGGACACCTCTTC 2841599 >seq2507 Length=1002069 Score = 201 bits (222), Expect = 1e-46 Identities = 833/1306 (64%), Gaps = 10/1306 (1%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 |||||||| | ||||| |||| | ||||| ||||| || ||||| ||| ||| | | Sbjct 536433 TCGACCGTGCTCTTCATGTTGA-AGCAGTAAGACTCGAGGCCGTTCTTGGCCGCGATCGT 536375 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 | | | ||| || || || ||||| ||||| || | |||||| | || || Sbjct 536374 CTCCTTCTGCTTCTCGTCCTCGCTGCGGTACTTCTCCGCCTCGTTCACCATCCTCTCGAT 536315 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 ||| || || | | ||||| || || || || || ||||| | || || | Sbjct 536314 GTCCTCCTTGCTGAGCCGGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTGCCGGT 536255 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 || ||| || | || || || | || || || || || | ||||| | || | Sbjct 536254 GGACTTGTCCACGGCGGACACGTTGAGGATGCCGTTCGCGTCGATGTCGAAGGTGACCTC 536195 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 || || || || | || || | ||| ||||| | | || || | || || | Sbjct 536194 GATCTGAGGGACTCCACGTGGCGCCGGTGGGATACCGCTGAGCTCGAACTTGCCCAGCAG 536135 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 | |||| ||| ||| | | || ||||| || || || | ||| ||| | || || Sbjct 536134 ATTGTTGTCCTTCGTCATGGCGCGCTCACCCTCGTACACCTGAATCAACACGCCCGGCTG 536075 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 ||| || ||| | |||| | || | ||| | || || || || || ||| Sbjct 536074 ATTGTCGGCGTACGTCGTGAAGGTCTGAGTCTGCTTCGTCGGGATGGTGGTGTTCCTCTT 536015 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 || | || |||||| | || ||| || |||| || ||||| || || || ||||| Sbjct 536014 GATGAGCGCGGTCATGACGCCGCCCGCGGTCTCGATGCCGAGAGAAAGCGGCGTGACGTC 535955 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | || | || ||| || || ||| || || | ||| || ||||| || Sbjct 535954 GAGCAGAAGCAAGTCCTGCACTTCCTCGGATTTGTCGCCGTGCAGGATAGCCGCTTGCAC 535895 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | ||| || || || || ||||| |||||||| || | || || ||||| || ||||| Sbjct 535894 GGCCGCTCCATAGGCCACAGCCTCGTCGGGGTTGATGGACTTGTTGAGTTCCTTGCCGTT 535835 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 || | ||| | | | || || || ||||| || || || || ||||| | ||| Sbjct 535834 GAAGAAGTCCTGCAGGAGCTTCTGGATCTTGGGGATACGGGTGGAACCGCCGACTAGAAC 535775 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215 ||| |||| | | | || || ||||| | ||| || || | || || || || || Sbjct 535774 GATGTCATGGATCTGTGCCTTGTCCATCTTGGCGTCGCGCAGCGACTTCTCCACGGGCTC 535715 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 | ||||||| || || || ||||| || || || || || ||||| || Sbjct 535714 GAGGGTGCCGCGGAACAGATCGGCGCAGAGCTCCTCGAAGCGAGCTCGCGTGATGGAGGT 535655 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335 || || || | || ||||| | |||||| || || ||| | | || | | ||| || Sbjct 535654 GTAAAAGTCGATTCCCTCGTAGAGCGAATCGATCTCGATGCTGGCCTGCGTGGACGACGA 535595 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || ||||| |||||||| || || || || | |||||| || || ||| ||| Sbjct 535594 CAGAGTACGCTTCGCGCGCTCGCAGGCTGTGCGCAGACGACGGAGCGCGCGCTTGTTTGA 535535 Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTG-TCGA--AGGAGTC 7451 || | || || || | || || || ||||| | || | ||||| | || | | | Sbjct 535534 GGTCAGGTCCTTTTTGTACTTGCGCTTGAACTCCTGCACA-AAGTGATTGACCATGCGGT 535476 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 | ||||| || || ||||||| || || || || || || | || || || |||| Sbjct 535475 TG---TCGAAGTCCTCGCCACCCAGATGGGTGTCGCCGGCCGTGGACTTAACCTCGAAGA 535419 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 | || | || ||| | | | || || || || || |||||||| || || || || | Sbjct 535418 TGCCGTCCTCGATGGTCAGGATGGACACGTCGAAGGTGCCACCACCGAGATCGAAGATTA 535359 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | |||||| ||| || ||||| ||||| ||||||||||| || || || || | Sbjct 535358 GGACGTTCCGCTCGCCGGTGGCCTTCTTGTCGAGGCCGTACGCGATTGCAGCGGCGGTGG 535299 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || || ||||| || ||||| ||| | || || | || || || || || | Sbjct 535298 GCTCGTTGATGATACGCAGCACGTTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCT 535239 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || ||||| ||||| ||||| || ||||| || | || || | | || | || | Sbjct 535238 GACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCATTGCTAACGGTTTTGC 535179 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | || || | || ||| | || ||||| ||| || |||||||| Sbjct 535178 CTAGGTATGCCTCTGCGGTCTCCTTCATCTTGACCAGGACCATCGA 535133 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 || |||||| ||||| || ||||||||||| ||||||||| || ||||| ||||| | Sbjct 534271 CACCAAAAATGGTGTTATTCGGGTTCATGGCGACTTGGTTCTTGGCGGCGTCTCCGATGA 534212 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072 |||| || ||||||| || || || || || ||||| ||||| || || |||| Sbjct 534211 GACGCTC---GGTTTCCGTGAAAGCCACATAACTAGGCGTCGTGCGATTTCCCTGATCGT 534155 Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTA 8132 | || || || ||||| | ||| || | |||||||| || || || || || || | Sbjct 534154 TGGCGATGATCTCTACCTTGCCGTGCTGGAAAACGCCGACACAGGAGTAAGTCGTGCCAA 534095 Query 8133 AATCAATACCGATTGC 8148 ||| ||||| | ||| Sbjct 534094 GATCGATACCAACTGC 534079 >seq2581 Length=3237177 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 115367 TACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAAC-CCTCTC 115425 || |||||||||| || ||||||||||| || | ||||| | |||| |||||| Sbjct 741070 TAACTTCATCTCGCGAAATCAGTTCATTACTGAAGGTGAGTCCTGGCA-TAACTCCTCTC 741012 Query 115426 TTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCA 115485 ||||| | ||| ||||| ||| |||||||| ||| || ||||||||||| ||| Sbjct 741011 TTTTTCAGCCAGAAAATCGCAGCGAAACTACCGCTGAAAAAGATACCTTCAACCGCTGCA 740952 Query 115486 AAGGCTAATAAACGTTCAGCAAATG--GTCGTTTC-TTATCAAACCACTTCATAGCCCAT 115542 || |||| | |||||| | ||||| | |||| | || | ||| |||| |||||| Sbjct 740951 AACGCTACAACACGTTCGGGAAATGTAGCGCTTTCATGATTGATCCAATTCAAAGCCCAC 740892 Query 115543 TTCGCCTTTCTTTC 115556 || ||| ||||||| Sbjct 740891 TTAGCC-TTCTTTC 740879 >seq2953 Length=635362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||||| | ||||| || | || || || |||||||| ||||| | ||||| |||| Sbjct 617519 TTATCCATGCCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACTCGAAGCACGTTC 617460 Query 7658 AGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | |||| ||| |||| |||||||| || ||||||||||| ||||||||||| || | Sbjct 617459 AATCCAGAAATC--TGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATCGTTAAAATACG 617402 Query 7716 CCGGGACCGTTACGACCGC 7734 | || || || | ||||| Sbjct 617401 CTGGTACAGTAATAACCGC 617383 >seq2378 Length=606957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/273 (68%), Gaps = 12/273 (4%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || || || || ||||| || || || || || || || |||||| | || || Sbjct 326929 GATACGTCGAAAGTACCGCCGCCGAGATCGAAGATCAGAACGTTCCTTTCACCGCGACCC 326870 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || || ||||| ||| ||||| || || || || || || ||||| || || ||| Sbjct 326869 TTTTTGTCGAGTCCG---GCGATGGCGGCTGCGGTCGGCTCGTTAATGATCTTCAGGACA 326813 Query 7654 GTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 |||||| | || ||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 326812 -TTCAGGGCGGCGATAGTGCCCCGCGTCCTTCGTGGTCTGGCGTTGAGAGTCGTTGAAGT 326754 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | |||| || | || || | |||||| | | || | ||| |||||| || | Sbjct 326753 ACGCCGTGATC------ACGGCATTCGTGACGGCCGTGCCCAAATAATCTTCCGCAATTT 326700 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805 ||||||||||| | || ||| |||| | |||| Sbjct 326699 CTTTCATTTTGATCAGGACCGTCGAGAAGATCT 326667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635108744345200