Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2927 271 1e-67
seq2507 201 1e-46
seq2581 95.1 2e-14
seq2953 84.2 3e-11
seq2378 84.2 3e-11
>seq2927
Length=4912583
Score = 271 bits (300), Expect = 1e-67
Identities = 729/1108 (66%), Gaps = 5/1108 (0%)
Strand=Plus/Minus
Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764
||||||| || || | ||||| | || | |||||| ||| ||||| || || | ||
Sbjct 2842704 TACCATTGGCGTCGATGTCGAAGGTAACTTCAATTTGCGGTACGCCCCTAGGCGCAGGTG 2842645
Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824
| || ||||| | |||||| ||||||| | |||| ||| | | | || | || |
Sbjct 2842644 GTATTCCCGTCAGCTCAAATTTACCAAGGATGTTGTTGTCCTTGGTCATCGCTCTCTCTC 2842585
Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTT 6884
| || ||||||| ||| || | || ||||| || ||| | || | ||
Sbjct 2842584 CCTCGTAGACTTGAATAAGTACTCCCGGCTGATTGTCGGAATACGTGGTAAACGTCTGCG 2842525
Query 6885 CTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAG 6944
| ||| | || ||||| || || ||| || | | |||||| | ||| || |
Sbjct 2842524 TCTGCTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAAGTGGTCATGACACCGCCAGCCG 2842465
Query 6945 TTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGT 7004
| || | || || ||||| || |||||||||| || | ||| |||||||| |||
Sbjct 2842464 TCTCAATGCCCAGCGACAGCGGAGTCACGTCCAGCAGAAGCAGATCTTGAACCTCTTCAG 2842405
Query 7005 TCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063
| || || || ||| | || || || |||| || ||||| || || ||||| ||
Sbjct 2842404 ACTTGTCGCC-GTGCAGAATAGCTGCCTGAACCGCTGCGCCGTAGGCAACAGCCTCGTCC 2842346
Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123
|| || || | |||||||||||| || ||||| || |||| | || | |||||
Sbjct 2842345 GGATTGATGGATTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGAAGCAGCTTCTGAATC 2842286
Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATT-TCATTCACTTTCGATTTATCGAT 7182
|| || || | || || |||||||| | ||| || | | |||| | || || ||
Sbjct 2842285 TTTGGTATCCTGGTAGAGCCACCGACTAGAACTATGCTTGTGTACTTGTGCCTTGTCCAT 2842226
Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242
||| | ||| | || | ||| || |||||||| | | | ||||| || ||
Sbjct 2842225 CTTCGCGTCCCTCAGCGCTTTCTCCACAGGTTCGAGGGTGCTTCTGAACATATCGGCGCA 2842166
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302
||||||||||| | || | || ||||| || ||||| || | || ||| | | |||
Sbjct 2842165 GAGTTCCTCAAATCTGGCCCTAGTGATGGACGTGTAGAAGTCGATACCCTCGAACAGCGA 2842106
Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362
||||| |||||| | | || | || ||| || |||| || || | ||| || ||
Sbjct 2842105 GTCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAATGTTCTTTTCGCCCTCTCGCAGGC 2842046
Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422
||| | | || | ||||| | | ||| | | || || || | || | ||
Sbjct 2842045 CGTCCTCAGGCGTCTCAGGGCTCTCTTGTTGGTGCTCAAGTCCTTTTTGTACTTCCTCTT 2841986
Query 7423 AAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| |||| || | ||||| | | || || || || || || || | || |
Sbjct 2841985 GAATTCTTGCACA-AAGTGATTCACCATTCGATTGTCAAAGTCCTCTCCGCCGAGATGCG 2841927
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || | ||| || |||||||| || ||||||| | | | ||| ||||
Sbjct 2841926 TGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCTTCAATTGTCAGGATCGACACAT 2841867
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTAT 7601
|||| ||||| ||||||| ||| || || || |||||| | ||| | | |||||||
Sbjct 2841866 CAAAGGTACCTCCACCCAAGTCGAAGATCAGGACGTTCTTCTCGCCTGAAGTTTTCTTAT 2841807
Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661
||||||||||||| || || || ||||| || || || || || | ||| |||| |
Sbjct 2841806 CGAGACCGTACGCTATCGCAGCTGCCGTCGGCTCGTTTATTATCCTGAGAACATTCAAAC 2841747
Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721
| || |||| | || || ||||||||||| | || ||||| || || || || || |
Sbjct 2841746 CGGCGATAGCGCCGGCGTCCTTCGTCGCTTGCCTCTGAGAATCATTGAAATAAGCTGGTA 2841687
Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781
| || | ||| |||| ||| || |||| || ||||| | |||||| | || ||||| |
Sbjct 2841686 CAGTGATGACGGCGTTCGTAACAGTCTTGCCCAGATATGCTTCCGCCGTTTCCTTCATCT 2841627
Query 7782 TGGTAAGAACCATCGATGAAATCTCTTC 7809
| || | |||||| || || | ||||||
Sbjct 2841626 TCGTCAAAACCATAGAGGACACCTCTTC 2841599
>seq2507
Length=1002069
Score = 201 bits (222), Expect = 1e-46
Identities = 833/1306 (64%), Gaps = 10/1306 (1%)
Strand=Plus/Minus
Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555
|||||||| | ||||| |||| | ||||| ||||| || ||||| ||| ||| | |
Sbjct 536433 TCGACCGTGCTCTTCATGTTGA-AGCAGTAAGACTCGAGGCCGTTCTTGGCCGCGATCGT 536375
Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615
| | | ||| || || || ||||| ||||| || | |||||| | || ||
Sbjct 536374 CTCCTTCTGCTTCTCGTCCTCGCTGCGGTACTTCTCCGCCTCGTTCACCATCCTCTCGAT 536315
Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675
||| || || | | ||||| || || || || || ||||| | || || |
Sbjct 536314 GTCCTCCTTGCTGAGCCGGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTGCCGGT 536255
Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735
|| ||| || | || || || | || || || || || | ||||| | || |
Sbjct 536254 GGACTTGTCCACGGCGGACACGTTGAGGATGCCGTTCGCGTCGATGTCGAAGGTGACCTC 536195
Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795
|| || || || | || || | ||| ||||| | | || || | || || |
Sbjct 536194 GATCTGAGGGACTCCACGTGGCGCCGGTGGGATACCGCTGAGCTCGAACTTGCCCAGCAG 536135
Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855
| |||| ||| ||| | | || ||||| || || || | ||| ||| | || ||
Sbjct 536134 ATTGTTGTCCTTCGTCATGGCGCGCTCACCCTCGTACACCTGAATCAACACGCCCGGCTG 536075
Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915
||| || ||| | |||| | || | ||| | || || || || || |||
Sbjct 536074 ATTGTCGGCGTACGTCGTGAAGGTCTGAGTCTGCTTCGTCGGGATGGTGGTGTTCCTCTT 536015
Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975
|| | || |||||| | || ||| || |||| || ||||| || || || |||||
Sbjct 536014 GATGAGCGCGGTCATGACGCCGCCCGCGGTCTCGATGCCGAGAGAAAGCGGCGTGACGTC 535955
Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035
| || | || ||| || || ||| || || | ||| || ||||| ||
Sbjct 535954 GAGCAGAAGCAAGTCCTGCACTTCCTCGGATTTGTCGCCGTGCAGGATAGCCGCTTGCAC 535895
Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095
| ||| || || || || ||||| |||||||| || | || || ||||| || |||||
Sbjct 535894 GGCCGCTCCATAGGCCACAGCCTCGTCGGGGTTGATGGACTTGTTGAGTTCCTTGCCGTT 535835
Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155
|| | ||| | | | || || || ||||| || || || || ||||| | |||
Sbjct 535834 GAAGAAGTCCTGCAGGAGCTTCTGGATCTTGGGGATACGGGTGGAACCGCCGACTAGAAC 535775
Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215
||| |||| | | | || || ||||| | ||| || || | || || || || ||
Sbjct 535774 GATGTCATGGATCTGTGCCTTGTCCATCTTGGCGTCGCGCAGCGACTTCTCCACGGGCTC 535715
Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275
| ||||||| || || || ||||| || || || || || ||||| ||
Sbjct 535714 GAGGGTGCCGCGGAACAGATCGGCGCAGAGCTCCTCGAAGCGAGCTCGCGTGATGGAGGT 535655
Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335
|| || || | || ||||| | |||||| || || ||| | | || | | ||| ||
Sbjct 535654 GTAAAAGTCGATTCCCTCGTAGAGCGAATCGATCTCGATGCTGGCCTGCGTGGACGACGA 535595
Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395
| || ||||| |||||||| || || || || | |||||| || || ||| |||
Sbjct 535594 CAGAGTACGCTTCGCGCGCTCGCAGGCTGTGCGCAGACGACGGAGCGCGCGCTTGTTTGA 535535
Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTG-TCGA--AGGAGTC 7451
|| | || || || | || || || ||||| | || | ||||| | || | | |
Sbjct 535534 GGTCAGGTCCTTTTTGTACTTGCGCTTGAACTCCTGCACA-AAGTGATTGACCATGCGGT 535476
Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511
| ||||| || || ||||||| || || || || || || | || || || ||||
Sbjct 535475 TG---TCGAAGTCCTCGCCACCCAGATGGGTGTCGCCGGCCGTGGACTTAACCTCGAAGA 535419
Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571
| || | || ||| | | | || || || || || |||||||| || || || || |
Sbjct 535418 TGCCGTCCTCGATGGTCAGGATGGACACGTCGAAGGTGCCACCACCGAGATCGAAGATTA 535359
Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631
| |||||| ||| || ||||| ||||| ||||||||||| || || || || |
Sbjct 535358 GGACGTTCCGCTCGCCGGTGGCCTTCTTGTCGAGGCCGTACGCGATTGCAGCGGCGGTGG 535299
Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691
| || || || ||||| || ||||| ||| | || || | || || || || || |
Sbjct 535298 GCTCGTTGATGATACGCAGCACGTTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCT 535239
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
| || ||||| ||||| ||||| || ||||| || | || || | | || | || |
Sbjct 535238 GACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCATTGCTAACGGTTTTGC 535179
Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797
| || || | || ||| | || ||||| ||| || ||||||||
Sbjct 535178 CTAGGTATGCCTCTGCGGTCTCCTTCATCTTGACCAGGACCATCGA 535133
Score = 104 bits (114), Expect = 3e-17
Identities = 141/196 (72%), Gaps = 3/196 (2%)
Strand=Plus/Minus
Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012
|| |||||| ||||| || ||||||||||| ||||||||| || ||||| ||||| |
Sbjct 534271 CACCAAAAATGGTGTTATTCGGGTTCATGGCGACTTGGTTCTTGGCGGCGTCTCCGATGA 534212
Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072
|||| || ||||||| || || || || || ||||| ||||| || || ||||
Sbjct 534211 GACGCTC---GGTTTCCGTGAAAGCCACATAACTAGGCGTCGTGCGATTTCCCTGATCGT 534155
Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTA 8132
| || || || ||||| | ||| || | |||||||| || || || || || || |
Sbjct 534154 TGGCGATGATCTCTACCTTGCCGTGCTGGAAAACGCCGACACAGGAGTAAGTCGTGCCAA 534095
Query 8133 AATCAATACCGATTGC 8148
||| ||||| | |||
Sbjct 534094 GATCGATACCAACTGC 534079
>seq2581
Length=3237177
Score = 95.1 bits (104), Expect = 2e-14
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 115367 TACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAAC-CCTCTC 115425
|| |||||||||| || ||||||||||| || | ||||| | |||| ||||||
Sbjct 741070 TAACTTCATCTCGCGAAATCAGTTCATTACTGAAGGTGAGTCCTGGCA-TAACTCCTCTC 741012
Query 115426 TTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCA 115485
||||| | ||| ||||| ||| |||||||| ||| || ||||||||||| |||
Sbjct 741011 TTTTTCAGCCAGAAAATCGCAGCGAAACTACCGCTGAAAAAGATACCTTCAACCGCTGCA 740952
Query 115486 AAGGCTAATAAACGTTCAGCAAATG--GTCGTTTC-TTATCAAACCACTTCATAGCCCAT 115542
|| |||| | |||||| | ||||| | |||| | || | ||| |||| ||||||
Sbjct 740951 AACGCTACAACACGTTCGGGAAATGTAGCGCTTTCATGATTGATCCAATTCAAAGCCCAC 740892
Query 115543 TTCGCCTTTCTTTC 115556
|| ||| |||||||
Sbjct 740891 TTAGCC-TTCTTTC 740879
>seq2953
Length=635362
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/139 (74%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657
||||| | ||||| || | || || || |||||||| ||||| | ||||| ||||
Sbjct 617519 TTATCCATGCCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACTCGAAGCACGTTC 617460
Query 7658 AGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715
| |||| ||| |||| |||||||| || ||||||||||| ||||||||||| || |
Sbjct 617459 AATCCAGAAATC--TGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATCGTTAAAATACG 617402
Query 7716 CCGGGACCGTTACGACCGC 7734
| || || || | |||||
Sbjct 617401 CTGGTACAGTAATAACCGC 617383
>seq2378
Length=606957
Score = 84.2 bits (92), Expect = 3e-11
Identities = 185/273 (68%), Gaps = 12/273 (4%)
Strand=Plus/Minus
Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594
|| || || || ||||| || || || || || || || |||||| | || ||
Sbjct 326929 GATACGTCGAAAGTACCGCCGCCGAGATCGAAGATCAGAACGTTCCTTTCACCGCGACCC 326870
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653
|| || ||||| ||| ||||| || || || || || || ||||| || || |||
Sbjct 326869 TTTTTGTCGAGTCCG---GCGATGGCGGCTGCGGTCGGCTCGTTAATGATCTTCAGGACA 326813
Query 7654 GTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712
|||||| | || ||||| || || || ||||| | || ||||| || ||||| ||||
Sbjct 326812 -TTCAGGGCGGCGATAGTGCCCCGCGTCCTTCGTGGTCTGGCGTTGAGAGTCGTTGAAGT 326754
Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772
| |||| || | || || | |||||| | | || | ||| |||||| || |
Sbjct 326753 ACGCCGTGATC------ACGGCATTCGTGACGGCCGTGCCCAAATAATCTTCCGCAATTT 326700
Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805
||||||||||| | || ||| |||| | ||||
Sbjct 326699 CTTTCATTTTGATCAGGACCGTCGAGAAGATCT 326667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635108744345200
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