Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2680 104 3e-17 >seq2680 Length=870558 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 || || ||| | ||||| |||||||| || || | ||||| ||||| || ||| | Sbjct 615412 CTATCGTGTTTGATGATAACATATCCGTCGACGAACGGTGTGTTTGAGGAAACGATCGGC 615471 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | |||||||| || || || | || || || || ||| | || || || || | Sbjct 615472 GACATATGTAACATGGTGCACAATGTCGGCGGACAAGTGTATTTAGACGGCGCCAACATG 615531 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 ||||| ||||| |||||| || | || ||||| || || | ||||| ||| Sbjct 615532 AATGCTCAGGTTGGTCTATGTCGTCCCGGCGATTATGGCAGCGACGTGTCGCATCTCAAC 615591 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 || || ||||| ||||||||||| || |||||||| || ||||| | ||||| ||||| Sbjct 615592 TTGCACAAGACCTTCTGTATTCCTCACGGAGGTGGCGGGCCTGGTATGGGTCCCATTGGA 615651 Query 159778 GT 159779 || Sbjct 615652 GT 615653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 158576 GATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCT 158635 |||| || || || || | ||||| || |||||||| |||||||| ||||| || |||| Sbjct 614277 GATTGGCCCTGCAAACGCGTGAGCAACACATCAGAAGGGACAAAGCCACCAGCAATATCT 614336 Query 158636 GCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 | || ||||||||| |||||||||||||||| | | | || || | ||||| || Sbjct 614337 GTACCGCACAAGCATTGCTGGCTAATATGTCCGCGATGTACGCGGTGTATCACGG 614391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588028927560800