Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3008 183 7e-41 seq2987 156 9e-33 seq2856 131 4e-25 >seq3008 Length=1134530 Score = 183 bits (202), Expect = 7e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || || |||||||||||||| || | | ||| | ||||| ||| Sbjct 387189 ACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCCATCCTCG 387248 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| ||||| || || |||| |||||| || ||||||||||| ||||| |||||| Sbjct 387249 AGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCTTGA 387308 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| |||||||||||||| || ||| || ||||| | |||| ||||||| Sbjct 387309 ATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAATCGTCTTT 387368 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| ||||| | ||||| Sbjct 387369 CCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | ||||||||||| |||||||||||||||||||| | || |||| Sbjct 387867 AGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGA 387926 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||| || || || || ||||| | || ||||| || ||||| || ||||| Sbjct 387927 CCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCC 387986 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||||||| |||||||||||| || ||||| || || ||||| | || Sbjct 387987 TTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTG 388046 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | |||||| || || | |||||| Sbjct 388047 ATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | || ||||| || ||||| |||||||||||||||| ||| || | || ||| Sbjct 388101 AAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCT 388160 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || ||||| || || || ||||| | || || || || ||||| ||||| ||||||||| Sbjct 388161 TCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCT 388220 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||||||| ||| ||||||||||| || || || ||| ||||| | |||| ||| Sbjct 388221 TGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTC 388280 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| | |||||| ||||| | ||||| Sbjct 388281 TTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || |||||||| ||||||||||| |||||||||| || |||| Sbjct 387408 AGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGA 387467 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || ||||| | || || || || ||||| || |||||| Sbjct 387468 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCT 387527 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| ||||| ||||| || || || || || ||||| | || Sbjct 387528 TTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTG 387587 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| ||||| | |||||| Sbjct 387588 ATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||| | || | ||| || || || || ||||||||||| | | ||| | Sbjct 388323 AGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGA 388382 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || || || | || || || || ||||| ||||||||| Sbjct 388383 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCT 388442 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||||||| ||| || ||||| || ||||| || ||| ||||| | || Sbjct 388443 TTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTT 388502 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||||||||| ||||| ||||| | |||||| Sbjct 388503 ATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||| | || | ||| || || || || || |||||||||| | ||| | Sbjct 388551 AGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGA 388610 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | || || || || || ||||| || ||| Sbjct 388611 CCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCT 388670 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||| || || |||||||| || || ||| ||| |||||||| || Sbjct 388671 TTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTT 388730 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || ||||| || || || || | |||||| Sbjct 388731 ATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 >seq2987 Length=818656 Score = 156 bits (172), Expect = 9e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| |||||| | ||| || ||||| || |||||||| || || || | ||||||||| Sbjct 733787 AGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTG 733728 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || ||||| || || ||||| || || |||||||| |||||| Sbjct 733727 CCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCT 733668 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || ||||| || ||||| || || ||||| ||| ||| ||||| || || Sbjct 733667 TTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTG 733608 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||| ||||| | |||||| Sbjct 733607 ATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || |||||||| || || || | ||||||||| |||||||| Sbjct 733550 ACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCATCTTCC 733491 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || || || || || || |||||||| ||||||||||| || Sbjct 733490 AGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTGTCCTGG 733431 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || || || ||||| ||| ||| ||||| || || | ||||| Sbjct 733430 ATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATGGTCTTG 733371 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| ||||| || | ||||||| Sbjct 733370 CCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | || || ||||| || ||||| || || ||||| | ||||||||| || || Sbjct 733326 CAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTC 733267 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||| |||||||| || || || || || ||||||||||| ||||| || Sbjct 733266 TTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATC 733207 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||||| || || || ||||| ||| |||||| |||||||| | || Sbjct 733206 TTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGT 733147 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | || || || || | |||||| Sbjct 733146 TTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 >seq2856 Length=4748033 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| ||||| ||||| | |||||| | |||||||| |||||||| || ||||||| Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 ||||||| || || || || ||||| || ||||| || || || || || || || | Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || || ||||| ||| || || ||||||| ||||| || || | |||||||||| Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 1620883 AAATCTGCAT 1620874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109438527844010