Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 127 2e-24
seq3007 100 3e-16
seq2848 82.4 9e-11
>seq2581
Length=3237177
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314
|||||||||||||||||||||||||| || || || || || |||||||| | |||||||
Sbjct 740634 TACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCT 740575
Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374
| || | |||||| || |||||||| | || ||||||||||| ||||||||| |
Sbjct 740574 GCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGAA 740515
Query 19375 GCTGCAAAAAATGCTAATACATG 19397
|| ||||| || || || |||||
Sbjct 740514 GCAGCAAAGAACGCCAAAACATG 740492
>seq3007
Length=2871884
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328
||| ||| | || |||||||| || ||||| || | |||||||||||||| ||||||||
Sbjct 1590327 ATTACCAATGTTTCTTTTAAGCTCCAGAAAATCAAAGATATCAGCATGCCACGGTTCTAA 1590268
Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388
|| ||||| | | ||||||| |||||| ||||||||||| | ||| | || | |
Sbjct 1590267 GTAAATTGCAAACGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATAGATAGCCATGTC 1590208
Query 48389 GTTATAAACTCTTAA 48403
|||||| | | ||||
Sbjct 1590207 GTTATATAATTTTAA 1590193
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668
|||||||| || || || ||||| |||| || || ||||| | |||||||||||
Sbjct 1589924 TTAAATAACGTCGGTGAAGCATGCGTAAAGTATCGTTCGGATAAATAGTTATATGTTTCT 1589865
Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728
||| | || || || || ||| || || | || || | ||| ||||| | |||
Sbjct 1589864 ATAGCTTTCTCAATGTCGTTTTCATGAATGCCAACAGCCACTCTCATCAACATGTGTTGT 1589805
Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788
|||||||| || || || ||| |||||||| ||||| |||||| ||||||||||
Sbjct 1589804 GGTCTTTCCACTATCGTGCCATTAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAA 1589745
Query 48789 CCAAAATAGTTGTA 48802
|||| ||| || ||
Sbjct 1589744 CCAATATAATTATA 1589731
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171
||||||| || | | ||||| ||| || | |||| | |||| || ||| |||||| ||
Sbjct 1590574 TAGTATACAATTCTTTAAATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAG 1590515
Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231
|||||||||| ||| ||||||||| | || | |||||| | |||||||||||
Sbjct 1590514 GACACATCAAGCTCCACATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCC 1590455
Query 48232 AAAGAGCTATAAATAAATCCCTAGTTC 48258
| ||| | |||||| || |||| ||
Sbjct 1590454 ACAGACCATAAAATAAGTCTCTAGCTC 1590428
>seq2848
Length=3396786
Score = 82.4 bits (90), Expect = 9e-11
Identities = 118/161 (73%), Gaps = 13/161 (8%)
Strand=Plus/Minus
Query 135787 TAATAAAAAAGATATTATTAAGTATATAATACATATTTATAAAAATTTCTATACAAA--- 135843
|| || |||| |||| |||| ||||||||| |||| |||| | || |||||| | |
Sbjct 1810740 TAGTATAAAATATAT-ATTACATATATAATATATATATATATATATATCTATATATAAAT 1810682
Query 135844 TGATGTTTCCAGTATATTGTCTACTATAATTATATTAAAATATATCATGTCAAT-TAACG 135902
| || ||| ||||| | || |||| |||||| ||||||||| || ||| |||
Sbjct 1810681 TTATTTTT----TATATAATATAATATATTTATAT-AAAATATAT---GTTAATGTAATA 1810630
Query 135903 AGTTTAAATTAATTTATAAAACTGTTGTTGTAAAAAATTTA 135943
| ||||| |||||||||||| |||| |||| ||||| ||
Sbjct 1810629 ACATTAAAATAATTTATAAAATTGTTATTGTGCAAAATATA 1810589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562087510129200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |