Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2581 127 2e-24 seq3007 100 3e-16 seq2848 82.4 9e-11 >seq2581 Length=3237177 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||||||||||||||||||||| || || || || || |||||||| | ||||||| Sbjct 740634 TACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCT 740575 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | |||||| || |||||||| | || ||||||||||| ||||||||| | Sbjct 740574 GCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGAA 740515 Query 19375 GCTGCAAAAAATGCTAATACATG 19397 || ||||| || || || ||||| Sbjct 740514 GCAGCAAAGAACGCCAAAACATG 740492 >seq3007 Length=2871884 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 ||| ||| | || |||||||| || ||||| || | |||||||||||||| |||||||| Sbjct 1590327 ATTACCAATGTTTCTTTTAAGCTCCAGAAAATCAAAGATATCAGCATGCCACGGTTCTAA 1590268 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || ||||| | | ||||||| |||||| ||||||||||| | ||| | || | | Sbjct 1590267 GTAAATTGCAAACGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATAGATAGCCATGTC 1590208 Query 48389 GTTATAAACTCTTAA 48403 |||||| | | |||| Sbjct 1590207 GTTATATAATTTTAA 1590193 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 |||||||| || || || ||||| |||| || || ||||| | ||||||||||| Sbjct 1589924 TTAAATAACGTCGGTGAAGCATGCGTAAAGTATCGTTCGGATAAATAGTTATATGTTTCT 1589865 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | || || || || ||| || || | || || | ||| ||||| | ||| Sbjct 1589864 ATAGCTTTCTCAATGTCGTTTTCATGAATGCCAACAGCCACTCTCATCAACATGTGTTGT 1589805 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 |||||||| || || || ||| |||||||| ||||| |||||| |||||||||| Sbjct 1589804 GGTCTTTCCACTATCGTGCCATTAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAA 1589745 Query 48789 CCAAAATAGTTGTA 48802 |||| ||| || || Sbjct 1589744 CCAATATAATTATA 1589731 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 ||||||| || | | ||||| ||| || | |||| | |||| || ||| |||||| || Sbjct 1590574 TAGTATACAATTCTTTAAATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAG 1590515 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 |||||||||| ||| ||||||||| | || | |||||| | ||||||||||| Sbjct 1590514 GACACATCAAGCTCCACATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCC 1590455 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTC 48258 | ||| | |||||| || |||| || Sbjct 1590454 ACAGACCATAAAATAAGTCTCTAGCTC 1590428 >seq2848 Length=3396786 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/161 (73%), Gaps = 13/161 (8%) Strand=Plus/Minus Query 135787 TAATAAAAAAGATATTATTAAGTATATAATACATATTTATAAAAATTTCTATACAAA--- 135843 || || |||| |||| |||| ||||||||| |||| |||| | || |||||| | | Sbjct 1810740 TAGTATAAAATATAT-ATTACATATATAATATATATATATATATATATCTATATATAAAT 1810682 Query 135844 TGATGTTTCCAGTATATTGTCTACTATAATTATATTAAAATATATCATGTCAAT-TAACG 135902 | || ||| ||||| | || |||| |||||| ||||||||| || ||| ||| Sbjct 1810681 TTATTTTT----TATATAATATAATATATTTATAT-AAAATATAT---GTTAATGTAATA 1810630 Query 135903 AGTTTAAATTAATTTATAAAACTGTTGTTGTAAAAAATTTA 135943 | ||||| |||||||||||| |||| |||| ||||| || Sbjct 1810629 ACATTAAAATAATTTATAAAATTGTTATTGTGCAAAATATA 1810589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087510129200