Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2581 113 5e-20 >seq2581 Length=3237177 Score = 113 bits (124), Expect = 5e-20 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || ||||| ||||| |||| ||||||||| || ||||||||||| || || || || Sbjct 740658 ATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATATTTTCTATGGCGATTTGG 740599 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 |||||||||||||| | ||||| | | || || || | | || || | | |||| Sbjct 740598 AAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAG 740539 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 ||||||||||| || |||||| ||| |||||||| || | ||||| ||||| | | Sbjct 740538 TTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTAT 740479 Query 37626 CTTTCATC--ATTTGATAATTT-TTTCCAATCATTAATATC 37663 || || || | |||| ||| || |||||| || |||| Sbjct 740478 CTCTCGTCAGAATTGAGCTTTTCTTCCCAATCCTTCTTATC 740438 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||||| |||| ||||||| ||||| | ||||||||| | ||||| |||| Sbjct 741067 CTTCATCTCGCGAAATCAGTTCATTACTGAAGGTGAGTCCTGGCATAACTCCTCTCTTTT 741008 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| || || || || ||| || || || ||||||||||| |||||||| | Sbjct 741007 TCAGCCAGAAAATCGCAGCGAAACTACCGCTGAAAAAGATACCTTCAACCGCTGCAAACG 740948 Query 37318 CTACAAGACGT 37328 |||||| |||| Sbjct 740947 CTACAACACGT 740937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592294366001200