Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 113 5e-20
>seq2581
Length=3237177
Score = 113 bits (124), Expect = 5e-20
Identities = 159/221 (72%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505
|| ||||| ||||| |||| ||||||||| || ||||||||||| || || || ||
Sbjct 740658 ATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATATTTTCTATGGCGATTTGG 740599
Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565
|||||||||||||| | ||||| | | || || || | | || || | | ||||
Sbjct 740598 AAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAG 740539
Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625
||||||||||| || |||||| ||| |||||||| || | ||||| ||||| | |
Sbjct 740538 TTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTAT 740479
Query 37626 CTTTCATC--ATTTGATAATTT-TTTCCAATCATTAATATC 37663
|| || || | |||| ||| || |||||| || ||||
Sbjct 740478 CTCTCGTCAGAATTGAGCTTTTCTTCCCAATCCTTCTTATC 740438
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
||||||||| |||| ||||||| ||||| | ||||||||| | ||||| ||||
Sbjct 741067 CTTCATCTCGCGAAATCAGTTCATTACTGAAGGTGAGTCCTGGCATAACTCCTCTCTTTT 741008
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| || || || || ||| || || || ||||||||||| |||||||| |
Sbjct 741007 TCAGCCAGAAAATCGCAGCGAAACTACCGCTGAAAAAGATACCTTCAACCGCTGCAAACG 740948
Query 37318 CTACAAGACGT 37328
|||||| ||||
Sbjct 740947 CTACAACACGT 740937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592294366001200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |