Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 185 7e-42
seq3008 163 2e-35
seq2856 123 2e-23
seq2838 102 6e-17
>seq2987
Length=818656
Score = 185 bits (204), Expect = 7e-42
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||||| | ||| ||||| ||||| || || ||||| ||||| || || ||||| |
Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| ||||||| | || |||||||| ||||| || || |||| |||||| ||||| || |
Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
||||||| ||||||||||| || || ||| ||| |||||| ||||||||| | |||||
Sbjct 733222 GAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCA 733163
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
| ||||| |||| ||||| || || | || || ||||| || ||||||
Sbjct 733162 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCATG 733113
>seq3008
Length=1134530
Score = 163 bits (180), Expect = 2e-35
Identities = 179/237 (76%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|||||||||||||| || ||||||||||| ||||||||||| | || |||| ||||
Sbjct 387873 AAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCT 387932
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| | ||| || || ||||| ||||||||||||||||| || || || ||||| || ||
Sbjct 387933 TCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCC 387992
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||||||| || || | || | ||||| || | || ||||| | ||||| |||
Sbjct 387993 TGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTT 388052
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTAAAACTA 101494
|| || || | |||||| ||||| || ||||| | ||||||| |||||||||
Sbjct 388053 TTTCCTGTAAGAGTTTTCACAAAAATTTGCATACCTCCGCGAAG--CCGTAAAACTA 388107
Score = 163 bits (180), Expect = 2e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| ||||| | |||||||| || || || |||||||||| | ||| | |||| ||
Sbjct 388559 AACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTC 388618
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| || || || ||||| ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 388619 AAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTG 388678
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| ||||||| | || | ||| ||||| | ||| ||||||||||| | |||||
Sbjct 388679 AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || || || || ||||| |||||||| ||
Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCATTGT 388771
Score = 158 bits (174), Expect = 1e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
||||| ||||| || || ||||||||||| || |||||||||| || |||| ||||
Sbjct 387414 AAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCT 387473
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| | ||| || || ||||| ||||||||||| ||||| || || || |||||||| |||
Sbjct 387474 TCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCT 387533
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|||||||| ||| ||| | || | ||| || || | || ||||| | |||| |||
Sbjct 387534 TGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTT 387593
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| |||||| || || ||||||||
Sbjct 387594 TTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 150 bits (166), Expect = 1e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101257 TAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316
|||||| | ||| | || ||||| ||||| ||||| ||||| | | ||| | | ||
Sbjct 387641 TAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTC 387700
Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376
|||| |||||| || ||||| ||||||||||| ||||| || || || || ||||||||
Sbjct 387701 TTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATC 387760
Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436
|||||| || ||||||| | || | ||| ||||| | || ||||| || |||| ||
Sbjct 387761 TTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGT 387820
Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||| ||||| | |||||| || || ||||||||
Sbjct 387821 TTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 145 bits (160), Expect = 6e-30
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|||||||||||||| || ||||||||||| || ||||||||||||| | || | | |
Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || | || || || ||||| ||||||||||| ||||| || || ||||| |||||
Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
|||||||||||| || || | || | || || || | ||| ||||| | || |
Sbjct 388218 TCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATG 388277
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || |||| |||||| || || ||||||||
Sbjct 388278 GTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Score = 141 bits (156), Expect = 7e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|||||| || | | ||| | || | |||||| |||||||| ||||| |||||||| ||
Sbjct 387167 ATTTCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTC 387226
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | ||| | |||| || | |||||| |||||||| |||| | |||||||| ||
Sbjct 387227 TGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGG 387286
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
|||||||| |||||||||||||| ||| || || | || | || ||||| | ||
Sbjct 387287 AGGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTC 387346
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || | ||| || || ||||||||||| || || ||||||||
Sbjct 387347 GACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| ||||| | |||||||| || || ||||||||||| | | ||| | |||| ||
Sbjct 388331 AACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTC 388390
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| ||| || || ||||| ||||| | ||| ||||| || || ||||||||||| |||||
Sbjct 388391 AAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTG 388450
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||||| || ||| | || | ||||| || | ||| ||||| | || | || ||
Sbjct 388451 AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||| || || ||||||||
Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540
>seq2856
Length=4748033
Score = 123 bits (136), Expect = 2e-23
Identities = 145/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339
||||||| ||||| ||||| | | ||| | |||| |||| ||||| || || || |
Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004
Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399
| | ||||| ||||| || ||||| || |||||||| || || || ||||||| |||
Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944
Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459
||| ||| || |||| ||| || || || || | || || || || | |||||||| |
Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884
Query 101460 ATATCTGCATGGTTAC 101475
| ||||||||||||||
Sbjct 1620883 AAATCTGCATGGTTAC 1620868
>seq2838
Length=268038
Score = 102 bits (112), Expect = 6e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| || || || ||||| || | |||||||| ||||||||||| |||||||
Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| || |||| || ||||| || || ||||| ||||| ||||| ||||| || |||
Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 121975
Query 101363 ATGCCT 101368
|| |||
Sbjct 121974 ATTCCT 121969
Score = 89.7 bits (98), Expect = 4e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425
||||||||||||||||||||| || ||| |||| | || ||||||| || || ||
Sbjct 121613 CCTTCTTTATCTTGAATTTTTGCCTTCACATTTTCGATCGTATCAGACGCCTCAACCTCG 121554
Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474
|| |||| ||||| || || | |||||| ||||| ||||||||| |||
Sbjct 121553 AGGGTGATGGTTTTCCCCGTAAGAGTTTTCACAAAGATCTGCATGATTA 121505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396263766181710
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