Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2987 185 7e-42 seq3008 163 2e-35 seq2856 123 2e-23 seq2838 102 6e-17 >seq2987 Length=818656 Score = 185 bits (204), Expect = 7e-42 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | ||| ||||| ||||| || || ||||| ||||| || || ||||| | Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||||| | || |||||||| ||||| || || |||| |||||| ||||| || | Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| ||||||||||| || || ||| ||| |||||| ||||||||| | ||||| Sbjct 733222 GAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCA 733163 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||||| |||| ||||| || || | || || ||||| || |||||| Sbjct 733162 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCATG 733113 >seq3008 Length=1134530 Score = 163 bits (180), Expect = 2e-35 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 |||||||||||||| || ||||||||||| ||||||||||| | || |||| |||| Sbjct 387873 AAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCT 387932 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| || || ||||| ||||||||||||||||| || || || ||||| || || Sbjct 387933 TCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCC 387992 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||||||| || || | || | ||||| || | || ||||| | ||||| ||| Sbjct 387993 TGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTT 388052 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTAAAACTA 101494 || || || | |||||| ||||| || ||||| | ||||||| ||||||||| Sbjct 388053 TTTCCTGTAAGAGTTTTCACAAAAATTTGCATACCTCCGCGAAG--CCGTAAAACTA 388107 Score = 163 bits (180), Expect = 2e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| | |||||||| || || || |||||||||| | ||| | |||| || Sbjct 388559 AACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTC 388618 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | || || || ||||| ||||||||||| |||||||| ||||| || ||||||||||| Sbjct 388619 AAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTG 388678 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||||||| | || | ||| ||||| | ||| ||||||||||| | ||||| Sbjct 388679 AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || || || ||||| |||||||| || Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCATTGT 388771 Score = 158 bits (174), Expect = 1e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| ||||| || || ||||||||||| || |||||||||| || |||| |||| Sbjct 387414 AAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCT 387473 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| || || ||||| ||||||||||| ||||| || || || |||||||| ||| Sbjct 387474 TCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCT 387533 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| ||| ||| | || | ||| || || | || ||||| | |||| ||| Sbjct 387534 TGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTT 387593 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| |||||| || || |||||||| Sbjct 387594 TTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 150 bits (166), Expect = 1e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101257 TAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316 |||||| | ||| | || ||||| ||||| ||||| ||||| | | ||| | | || Sbjct 387641 TAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTC 387700 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 |||| |||||| || ||||| ||||||||||| ||||| || || || || |||||||| Sbjct 387701 TTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATC 387760 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 |||||| || ||||||| | || | ||| ||||| | || ||||| || |||| || Sbjct 387761 TTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGT 387820 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| | |||||| || || |||||||| Sbjct 387821 TTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||||||||||||| || ||||||||||| || ||||||||||||| | || | | | Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | || || || ||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||||||| || || | || | || || || | ||| ||||| | || | Sbjct 388218 TCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATG 388277 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||| |||||| || || |||||||| Sbjct 388278 GTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | ||| | || | |||||| |||||||| ||||| |||||||| || Sbjct 387167 ATTTCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTC 387226 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | |||| || | |||||| |||||||| |||| | |||||||| || Sbjct 387227 TGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGG 387286 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||| |||||||||||||| ||| || || | || | || ||||| | || Sbjct 387287 AGGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTC 387346 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | ||| || || ||||||||||| || || |||||||| Sbjct 387347 GACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| | |||||||| || || ||||||||||| | | ||| | |||| || Sbjct 388331 AACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTC 388390 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||| || || ||||| ||||| | ||| ||||| || || ||||||||||| ||||| Sbjct 388391 AAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTG 388450 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||||| || ||| | || | ||||| || | ||| ||||| | || | || || Sbjct 388451 AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || |||||||| Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 >seq2856 Length=4748033 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 ||||||| ||||| ||||| | | ||| | |||| |||| ||||| || || || | Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 | | ||||| ||||| || ||||| || |||||||| || || || ||||||| ||| Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 ||| ||| || |||| ||| || || || || | || || || || | |||||||| | Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 101460 ATATCTGCATGGTTAC 101475 | |||||||||||||| Sbjct 1620883 AAATCTGCATGGTTAC 1620868 >seq2838 Length=268038 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| || || || ||||| || | |||||||| ||||||||||| ||||||| Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 121975 Query 101363 ATGCCT 101368 || ||| Sbjct 121974 ATTCCT 121969 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||||||||||||||||||| || ||| |||| | || ||||||| || || || Sbjct 121613 CCTTCTTTATCTTGAATTTTTGCCTTCACATTTTCGATCGTATCAGACGCCTCAACCTCG 121554 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || |||| ||||| || || | |||||| ||||| ||||||||| ||| Sbjct 121553 AGGGTGATGGTTTTCCCCGTAAGAGTTTTCACAAAGATCTGCATGATTA 121505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263766181710