Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3008 123 2e-23 seq2856 105 5e-18 >seq3008 Length=1134530 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || ||||| || ||| |||||||||||||||||||| || || ||||| Sbjct 387867 AGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGA 387926 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || |||||||| |||| ||||||||||||| || | || ||| Sbjct 387927 CCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCC 387986 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| || || | | | ||||| ||||| || || | || Sbjct 387987 TTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTG 388046 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||| |||||||| ||||| Sbjct 388047 ATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| |||||||| || ||| ||||||||||| |||||||| || || ||||| Sbjct 387408 AGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGA 387467 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| ||||| ||||||| || | || || Sbjct 387468 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCT 387527 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | || ||||| ||||| || || | ||| Sbjct 387528 TTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTG 387587 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| || ||||||||||| Sbjct 387588 ATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| || || ||||| || || ||||| |||||||||||||| || || | || Sbjct 388095 AGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGG 388154 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || |||||||| |||| ||||| ||||||| || | |||||| Sbjct 388155 CCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCT 388214 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAAC-CCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||| ||||| ||| | | | | | ||||| || || || || | ||| Sbjct 388215 TTGTCTTGAAT-TTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGT 388273 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| || | |||||| || ||||||||||| Sbjct 388274 AATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||||| || || | ||| | ||| || || || |||||||||||||| || ||| Sbjct 387171 CCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGAT 387230 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | ||||| || ||||| ||||||| |||||||| | ||| Sbjct 387231 AAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGA 387290 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| || || ||||||| || || | | | || || ||||| || Sbjct 387291 ATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACT 387350 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||| ||||| || |||||||| || ||||||||||| Sbjct 387351 TCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || |||| ||| | ||| || ||||| ||||| |||||||| | | | || Sbjct 387636 AGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGC 387695 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| || ||||| |||| ||||| ||||| | || | ||||| Sbjct 387696 CCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCT 387755 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||||||| | | || || || | ||| || |||| ||| Sbjct 387756 TTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTG 387815 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| || ||||||||||| Sbjct 387816 ATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || || || || |||||||||||||| | | | ||| | || || Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| |||| || ||| ||||||| || | ||| || ||||| | Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | ||||| || || || |||| ||| || || ||| Sbjct 388452 ATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTT 388511 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || ||||||||||| Sbjct 388512 CCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 >seq2856 Length=4748033 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| ||||| ||||| || ||| | || | || |||| |||||| || || || | Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | |||||||| ||||| | |||| ||||| || || ||||| ||||||| Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || || |||| || ||||| | ||||| || || ||||| | |||||||| | Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 48757 AAATCTGCATCGT 48769 |||||||||| || Sbjct 1620883 AAATCTGCATGGT 1620871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923532688690