Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 111 1e-19
seq3008 100 2e-16
seq2838 93.3 4e-14
>seq2987
Length=818656
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| |||||||| || | ||||| || ||||| || |||| ||| ||||
Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | || | || |||||| |||||||| || | || |||||
Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||| | || || || || ||||||||| |||||||| | |||| | | || |||||
Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||||||| ||||| || || ||| ||||| | | | |||||||| ||
Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAAT 733571
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || || || |||||| | || || |||||||| || |||| ||| ||||
Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | | | || |||||| |||||||| || | || |||||
Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|| | || || || || ||||||||| |||||||| | |||| | | || |||||
Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
||||||||| ||||| || || ||| |||| || || | || |||||
Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGG 733796
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| || || | || || ||||| || ||| || |||| ||||
Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || |||| || ||| || |||||||| | || |||||
Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | || ||||| || || |||||||||||||| | |||| | | |||||||||
Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| ||||| || || || |||| || | | |||||||| ||
Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAAT 733343
>seq3008
Length=1134530
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || || || ||||| |||| || |||||||| || ||| || | ||
Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
||| || | | || |||| || |||| || |||||||| ||| | || ||||
Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCGGATC 387508
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
| ||| | | |||||||| || |||||| | |||||| | ||| | ||||||| |
Sbjct 387507 AGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACA 387448
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768
|||||||||||||||| |||||||| |||| || ||
Sbjct 387447 ACATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAG 387411
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| ||||| | || || |||||||| || ||| || | |||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | ||||| |||||| ||||| || ||| | || ||||||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | | |||||||| || |||||| | |||||| | ||| | | ||||| ||
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905
Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756
|||||||||||||| ||||| ||
Sbjct 387904 ATTCAAAAAGAATCCACTCTTCA 387882
>seq2838
Length=268038
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726
|||||| ||| || | |||||||| ||||||||||| |||||| || ||| || ||||
Sbjct 121981 AGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAGGACTTTGTCCGA 122040
Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
|||||| || ||||| |||||||| | ||| | || || | || ||||||||
Sbjct 122041 TTATAATATACAAAAGGAATCTACGTTACACTTAGTGTTGCGCTTGCGAGGAGG 122094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425389090598370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |