Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2987 111 1e-19 seq3008 100 2e-16 seq2838 93.3 4e-14 >seq2987 Length=818656 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| || | ||||| || ||||| || |||| ||| |||| Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || | || |||||| |||||||| || | || ||||| Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || || || ||||||||| |||||||| | |||| | | || ||||| Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| ||||| || || ||| ||||| | | | |||||||| || Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAAT 733571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || |||||| | || || |||||||| || |||| ||| |||| Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || |||||| |||||||| || | || ||||| Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | || || || || ||||||||| |||||||| | |||| | | || ||||| Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||| ||||| || || ||| |||| || || | || ||||| Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGG 733796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || ||||| || ||| || |||| |||| Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || ||| || |||||||| | || ||||| Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || ||||| || || |||||||||||||| | |||| | | ||||||||| Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || || || |||| || | | |||||||| || Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAAT 733343 >seq3008 Length=1134530 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||| |||| || |||||||| || ||| || | || Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || |||| || |||| || |||||||| ||| | || |||| Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCGGATC 387508 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||| | | |||||||| || |||||| | |||||| | ||| | ||||||| | Sbjct 387507 AGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACA 387448 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||||||||||| |||||||| |||| || || Sbjct 387447 ACATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAG 387411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || |||||||| || ||| || | ||| Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| ||||| || ||| | || |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || |||||| | |||||| | ||| | | ||||| || Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||| ||||| || Sbjct 387904 ATTCAAAAAGAATCCACTCTTCA 387882 >seq2838 Length=268038 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 |||||| ||| || | |||||||| ||||||||||| |||||| || ||| || |||| Sbjct 121981 AGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAGGACTTTGTCCGA 122040 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||| || ||||| |||||||| | ||| | || || | || |||||||| Sbjct 122041 TTATAATATACAAAAGGAATCTACGTTACACTTAGTGTTGCGCTTGCGAGGAGG 122094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425389090598370