Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3008 127 1e-23 seq2987 123 2e-22 seq2927 109 4e-18 seq2856 107 1e-17 seq2953 105 4e-17 seq2939 104 2e-16 >seq3008 Length=1134530 Score = 127 bits (140), Expect = 1e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || ||||||||||||||| ||| || || ||| || || | || ||| Sbjct 387177 CGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTG 387236 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || |||||||| || |||||||| || | |||||||||||||||||| || Sbjct 387237 CGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCC 387296 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 || || |||||||||||| || || ||||| ||||||| | | | || ||| Sbjct 387297 TCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAA- 387355 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||| || |||||||| || Sbjct 387356 TGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTG 387394 Score = 125 bits (138), Expect = 5e-23 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 480564 ACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 || ||||| ||||| | || |||| | | ||||||||||| | ||| | |||| Sbjct 387645 ACCAGATGCAAAGTGGA-TTCCTTTTGGAT-ATTATAATCAGACAAAGTGCGCCCGTCTT 387702 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | |||||||||||||||||||| | ||| || |||||||| || || || || || |||| Sbjct 387703 CCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTT 387762 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTT 480740 ||||||| ||| ||| ||||||||||||| | | | ||| || || || ||| Sbjct 387763 GAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGA-CTTCCAGCGTGATGGTT 387821 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| ||||| ||||||||||| || Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTG 387850 Score = 114 bits (126), Expect = 8e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 480581 TTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAA 480640 |||||| || || ||||| | || |||| |||||||||||| ||||||||||| Sbjct 387434 TTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAA 387493 Query 480641 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGC 480700 || | ||| || ||||| ||||| |||||||| ||||||||||| || ||||||| Sbjct 387494 GATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATT 387553 Query 480701 TTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAA 480759 || |||||||| | || | || ||| | || || ||||| || || ||||| || | Sbjct 387554 CTCGATAGTATCTGATGCCTCAA-CTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGA 387612 Query 480760 CGAAAATTTG 480769 ||||||| || Sbjct 387613 CGAAAATCTG 387622 Score = 100 bits (110), Expect = 2e-15 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 480569 ATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTG 480628 |||||| || |||||| || ||| ||||| | || |||| |||||| ||||| Sbjct 387881 ATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCGAGTTG 387940 Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||||| ||||| || | ||| |||||||| ||||| |||||||||||||| ||||| || Sbjct 387941 TTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTGAATTTT 388000 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 | ||||| || || || || | || | | ||| | || || ||||| || | Sbjct 388001 TGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGA-CTTCTAAAGTGATGGTTTTTCCTG 388059 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || |||||||| Sbjct 388060 TAAGAGTTTTCACAAAAATTTG 388081 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| || ||||| |||||||| | ||| || ||||| || ||||| || || || Sbjct 388613 ATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTT 388672 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||| || ||| ||| ||||||||||||| | | |||||| || || Sbjct 388673 ATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTAT 388732 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || | ||||| || || || || Sbjct 388733 AGTTTTCCCAGTCAATGTCTTCACAAAGATCTG 388765 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || | || | ||| || ||| |||||| || ||| ||||| | || || Sbjct 388092 CGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTG 388151 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||| || ||||| ||||| || | ||| || ||||| ||||| || || Sbjct 388152 CGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCC 388211 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 || ||||||||||| ||| || || ||||| ||||| | || | | ||| | Sbjct 388212 TCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGA-CTTCTAA 388270 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| || |||||||| || Sbjct 388271 CGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTG 388309 Score = 89.7 bits (98), Expect = 3e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||||| | ||| | |||||||||||| |||||||||||||| | | || Sbjct 388361 ATTGTAATCAGACAAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTG 388420 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| || ||||| ||||||||||| ||| || ||| || || || || Sbjct 388421 CTGATCCGGAGGGATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTC 388480 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || || ||| || || || || || || | || ||||||||||| || Sbjct 388481 TGATGCTTCAACTTCCAA-CGTTATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTG 388537 >seq2987 Length=818656 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| | || | ||| ||||| ||| || | |||||||| | |||||| Sbjct 733334 CGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTT 733275 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||||| | ||| || ||||| || || ||||| || |||||||||||||| || Sbjct 733274 CTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCC 733215 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || || ||||| ||||| ||||||| ||| ||||| |||| | |||||| Sbjct 733214 TCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGG 733155 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| || ||||| ||||| || || ||||| Sbjct 733154 GTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTG 733117 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| ||||| || |||||||| ||| || || ||||| || | |||||| Sbjct 733562 CGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTT 733503 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| |||||| ||||| || || || ||||| ||||| || |||||||||||||| ||| Sbjct 733502 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCT 733443 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || || || ||| ||| ||| || || |||| | ||| || Sbjct 733442 TCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGC 733383 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || |||||||| || || ||||| Sbjct 733382 GTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTG 733345 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || | ||||||||| |||||| ||||| || || || ||||| |||||||| Sbjct 733748 TTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGC 733689 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| ||||| ||||| || || || ||| || ||| || || || Sbjct 733688 TGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCG 733629 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||| || || || ||||| || ||||| || || ||||| || || Sbjct 733628 GAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTG 733573 >seq2927 Length=4912583 Score = 109 bits (120), Expect = 4e-18 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 474530 TTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTT 474589 ||||| ||||| || || ||| | || || ||| || ||| |||||||| ||| Sbjct 2841467 TTGATCGGTCGCCGGTTCGAAGATGCGACGGTACAAAGCGACATGAAGCATTGGCCGTTT 2841526 Query 474590 AAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATAC--ACGCAGGTGAAACTA 474647 | |||||| |||| || || ||||| | || ||| | || ||| || || | Sbjct 2841527 ACGGTGATCAATGAAGGAGGCAAACCGAAAATC--AGCGTGTCTTACAAAGGCGAGACGA 2841584 Query 474648 A-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 | || | ||| ||| || | | || || |||||||| | || ||||| |||| ||| Sbjct 2841585 AGACTTTCTTCCCCG-AAGAGGTGTCCTCTATGGTTTTGACGAAGATGAAGGAAACGGCG 2841643 Query 474707 AGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 ||||||| || ||||| || || | || || || ||||| ||||| ||||| || Sbjct 2841644 GAAGCATATCTGGG-CAAGACTGTTACGAACGCCGTCATCACTGTACCAGCTTATTTCAA 2841702 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 ||||||||| | ||||| || || || || || || || ||| | |||||| | | Sbjct 2841703 TGATTCTCAGAGGCAAGCGACGAAGGACGCCGGCGCTATCGCCGGTTTGAATGTTCTCAG 2841762 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || ||||| || | || || ||||| |||||||| Sbjct 2841763 GATAATAAACGAGCCGACGGCAGCTGCGATAGCGTACGGTCTCGATAAGAA 2841813 >seq2856 Length=4748033 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||||||| | ||||| | |||||| || ||||| ||||| || ||||| || || Sbjct 1621053 ATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGTCGCTG 1620994 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||||| |||||||| || || || || ||||| ||| ||| ||| |||||||| Sbjct 1620993 CTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCTATAGTATC 1620934 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || ||||||||||| ||||| ||||| || || |||||||| || Sbjct 1620933 CGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAAATCTG 1620877 >seq2953 Length=635362 Score = 105 bits (116), Expect = 4e-17 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| Sbjct 617381 ATGCGGTTATTACTGTACCAGCGTATTTTAACGATTCTCAACGACAAGCCACAAAAGATG 617440 Query 474795 C-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 | ||| || ||| | || | || || | || | ||||| |||||||| ||||| ||| Sbjct 617441 CTGGGCAG-ATTTCTGGATTGAACGTGCTTCGAGTAATTAACGAACCAACCGCAGCTGCA 617499 Query 474854 CTTGCTTATGGTCTTGATAA 474873 ||||| || || | ||||| Sbjct 617500 CTTGCATACGGCATGGATAA 617519 >seq2939 Length=1430158 Score = 104 bits (114), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| ||| ||| |||| |||||||||||| | ||||| || ||||| || ||| Sbjct 977485 GATTTTTCGAGTCCCAATGTTGCTAAGGAAATGCATGTAGGACATTTAAGATCGACTATA 977426 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 ||||| || | ||| ||| | | |||| || | || || |||| | ||| Sbjct 977425 ATTGGAGAGAGTATTTCTAGGCTTTTAGAATATTTAGAGCACGATGTGTTAAGACTCAAT 977366 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 ||| | ||||||||||| ||||| |||||||||||||| ||| Sbjct 977365 CATGTAGGTGATTGGGGCACACAGTTTGGTATGTTAATAGCA 977324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268049228598440