Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2680 105 8e-18 >seq2680 Length=870558 Score = 105 bits (116), Expect = 8e-18 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| ||||| | ||||| || |||||||| || ||||||||||| ||||| || Sbjct 615653 ACTCCAATGGGACCCATACCAGGCCCGCCACCTCCGTGAGGAATACAGAAGGTCTTGTGC 615594 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | || || ||||| || | || |||||| ||||| ||| Sbjct 615593 AAGTTGAGATGCGACACGTCGCTGCCATAATCGCCGGGACGACATAGACCAACCTGAGCA 615534 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCAC---CATTGTCATGAACGATCTTACAT 138359 || | || || || || | ||| || || || | ||||| || || || |||||| Sbjct 615533 TTCATGTTGGCGCCGTCTAAATACACTTGTCCGCCGACATTG---TGCACCATGTTACAT 615477 Query 138360 ATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 || | | ||| || ||||| ||||| | ||||| |||||||| ||||| | ||| Sbjct 615476 ATGTCGCCGATCGTTTCCTCAAACACACCGTTCGTCGACGGATATGTTATCATCAAACAC 615417 Query 138420 GAGAG 138424 || || Sbjct 615416 GATAG 615412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578976470435600