Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3008 170 3e-37 seq2987 138 2e-27 >seq3008 Length=1134530 Score = 170 bits (188), Expect = 3e-37 Identities = 206/278 (74%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||| |||||| |||| || || || || || ||| Sbjct 388539 ATTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCG 388598 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || | ||||||||||||||||| || | ||| ||||| || Sbjct 388599 GACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGT 388658 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| ||||||| ||||| ||| ||||||||| |||| ||| Sbjct 388659 GGAATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCA 388718 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttatt-agt 193369 ||||| |||||||||||||| || || | || || ||||| || |||||| | || || Sbjct 388719 ACTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATTGTGTTCTGT 388778 Query 193370 aaaataattattttaaataata-tatactttatatttt 193406 ||||| |||||||| ||| |||| ||| |||| Sbjct 388779 AAAAT-----TTTTAAATTATATTATAAAGTATCTTTT 388811 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||| || | ||||| ||| || || ||||| | ||||| | ||| || Sbjct 387417 ACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCA 387476 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||||||| ||||| || || | ||| ||||| ||||| ||||||||||| ||||| Sbjct 387477 AGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGA 387536 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | ||| |||||||| || | ||||||||||| || || ||||| Sbjct 387537 ATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTTC 387596 Query 193332 CCTGTTAGCGtttttacaaatatttgcatt 193361 |||||||| ||||| || || || |||||| Sbjct 387597 CCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||||||||| || | || || |||||||| || || || || | || || Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| ||||| |||||||| || | ||| |||||||| || || || ||||||||||| Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGA 387764 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||||| ||| ||||||||| |||||||| ||||| || || || |||||| Sbjct 387765 ATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTA 387824 Query 193332 CCTGTTAGCGtttttacaaatatttgcat 193360 || || || ||||| || || || ||||| Sbjct 387825 CCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| |||||| || || || | ||||| | ||| || | ||||||||||||||| Sbjct 387894 TCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAG 387953 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || || | ||||||||| ||||| |||||||| || || || ||||| | || | || Sbjct 387954 ATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTC 388013 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttaca 193349 || || || || | ||| ||||||| ||| || ||||| ||||| || ||||| ||| Sbjct 388014 TCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACA 388073 Query 193350 aatatttgcat 193360 || |||||||| Sbjct 388074 AAAATTTGCAT 388084 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | ||||| || || |||||| ||||| ||||| || | | Sbjct 387183 CGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCCA 387242 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || || |||||||| | ||| |||||||||||||| || || |||||| Sbjct 387243 TCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTA 387302 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || ||| ||||| |||| ||| ||||| | || || Sbjct 387303 TCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAATC 387362 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || ||||||| ||||| || || || ||||| Sbjct 387363 GTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | || | || | ||||| |||| ||||| |||||| Sbjct 388076 AATTTGCATACCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATT 388135 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | || | || || | |||||||||||||| || || | ||| || Sbjct 388136 GTAATCGGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTG 388195 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| ||||| ||||| | || | || ||| ||||| || Sbjct 388196 ATCCGGAGGGATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGA 388255 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 | || ||||||| || || || || |||||||| ||||| || || || ||||| Sbjct 388256 TGCTTCGACTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 >seq2987 Length=818656 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || |||||||| || | ||| | || || ||| |||||||| || | ||||| | Sbjct 733556 CGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCA 733497 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| ||||| ||||| | | ||| ||||||||||| || |||||||| Sbjct 733496 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTG 733437 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| ||||| |||| || || || |||| || ||||| || || || Sbjct 733436 TCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATG 733377 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || || || || || || |||||||| ||||||||| Sbjct 733376 GTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || | ||||| ||| || | |||||| ||||| ||||| | | Sbjct 733752 AATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACG 733693 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||||||||| || |||||||| || || ||||||| ||||| ||| || || Sbjct 733692 TTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGT 733633 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttg 193357 ||||||| || ||||| || || || ||||| ||||| || ||||| || || || || Sbjct 733632 GTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTG 733573 Query 193358 catt 193361 |||| Sbjct 733572 CATT 733569 Score = 116 bits (128), Expect = 7e-21 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || || | ||||| || || |||||||| || || || || | | | Sbjct 733295 ATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGC 733236 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| || || ||||||||||| || |||| ||| | |||| ||||| Sbjct 733235 TGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTG 733176 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgc 193358 || |||| || || || || || |||||||| || || || || || ||||| |||||| Sbjct 733175 TCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGC 733116 Query 193359 at--tttat-tagtaaaataattatttta-aataa----tatatactttatattt 193405 || | || || | || || ||||||| ||||| || || ||||||||| Sbjct 733115 ATGATGAATCTAAAAGAAAAAATATTTTATAATAAAAATTAATTATTTTATATTT 733061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899620325589600