Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 149 9e-31
seq2987 111 2e-19
seq1957 87.8 3e-12
seq2581 86.0 9e-12
seq2856 84.2 3e-11
>seq3008
Length=1134530
Score = 149 bits (164), Expect = 9e-31
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| || || ||||| || |||||||| |||||||| | ||||
Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| |||||||| || || ||||||||||| ||||| ||||| || |||
Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| |||||| ||| || ||||| ||||| ||| | ||||||||||| || |||
Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032
|| || ||| || | || |||||| | |||
Sbjct 387217 AT-TCAAAAGGAATCTACACTTCATCTTGTG 387188
Score = 132 bits (146), Expect = 7e-26
Identities = 155/209 (74%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 155799 tataat---aaaaatttatgtaataaaatgcaaatatttattaaaaCATTGACTGGAAAA 155855
|||||| |||| |||| || | |||||| || ||| | || ||||||||||| |||
Sbjct 388795 TATAATTTAAAAATTTTACAGAACACAATGCAGATCTTTGTGAAGACATTGACTGGGAAA 388736
Query 155856 ACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAA 155915
||||| || | ||||| |||| |||||||| |||| || || ||| ||||| |||
Sbjct 388735 ACTATAACTCTTGAAGTTGAAGCTTCTGATACTATTGAGAATGTAAAAGCCAAAATTCAA 388676
Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975
|||||||| || || || || || || || | ||||||| |||||| || ||||| |||
Sbjct 388675 GATAAAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAA 388616
Query 155976 GATACCAGAACTTTATCAGATTATAATAT 156004
||| | ||||| || ||||| || ||
Sbjct 388615 GATGGTCGCACTTTGTCCGATTACAACAT 388587
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | || |||||||| || || ||||||||||| | ||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || ||||| || || || ||||| || ||||| || |||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||| | |||||| || || ||||||||| |||| | |||||||| |||
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037
|| ||||| | || ||||||||||| || ||
Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAG 387870
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| | || ||||| || ||||| ||||||||||||| ||
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||||| || ||||| ||||| ||||| ||||| ||||| || ||
Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||| | |||||| || ||||| ||||| | | || | || ||||| |||
Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035
|| ||||| | || || |||||||| |||
Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTA 388100
Score = 109 bits (120), Expect = 8e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 155822 aatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || ||||||| ||||| ||||| || || || || ||||| |||| ||
Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | || || || || ||||| ||||| ||||||||||| ||||| || ||
Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCA 388422
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| |||||||||| ||| || || || || |||||| | ||||| || ||||| ||
Sbjct 388421 GCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAA 388362
Query 156002 TAT 156004
|||
Sbjct 388361 TAT 388359
Score = 100 bits (110), Expect = 4e-16
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || ||||||| | || || ||||| || || | |||||||| ||||
Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| || || ||||||||||| || || || || || ||
Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||||| ||| || ||||| || ||||| | ||||| || |||||||
Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATA-- 387676
Query 156003 ATATCCAAA 156011
|||||||||
Sbjct 387675 ATATCCAAA 387667
>seq2987
Length=818656
Score = 111 bits (122), Expect = 2e-19
Identities = 184/263 (70%), Gaps = 12/263 (5%)
Strand=Plus/Plus
Query 155782 ataaagtatttattgtttataataaaaa--tttatgtaataaa------atgcaaatatt 155833
||||| || ||| | ||||| |||||| ||| | | || | |||||||| ||
Sbjct 733065 ATAAAATAATTAATTTTTATTATAAAATATTTTTTCTTTTAGATTCATCATGCAAATCTT 733124
Query 155834 tattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTT 155893
| | || || | |||||||||||||| || | || || |||| |||||| | |||
Sbjct 733125 TGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCTGACACTATAGA 733184
Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953
||| || ||| || || ||||||||||| ||||| ||||| || || || | ||||
Sbjct 733185 AAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAGCAGCGTCTGAT 733244
Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-- 156011
| || ||||| || | ||||| ||||||| | |||||||||| | |||||||
Sbjct 733245 CTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATA--ACATCCAAAAG 733302
Query 156012 GAGGCGACGCTTCATTTAGTGTT 156034
|| | || || ||||| || ||
Sbjct 733303 GAATCCACACTCCATTTGGTTTT 733325
>seq1957
Length=1295
Score = 87.8 bits (96), Expect = 3e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 139721 AATTATAATATTTTATATCAATATTCGTGTAAATATATAGAGGCATGTCGAATAATATTA 139780
|||| | ||| || | |||||||| |||||||| ||||| |||||| || | ||||||
Sbjct 134 AATTTTCATAAACTAAAACAATATTCATGTAAATACATAGAAGCATGTAGACTTATATTA 75
Query 139781 AATTCTAGAGGAAAATTATTAATTTTTGAACCGTTAGTTAATTTTGAAGGAATATC 139836
|| || | ||| |||| ||||| | |||||| || || | || |||||||||||
Sbjct 74 AAGTCAAAAGGTAAATGTTTAATATATGAACCATTCGTAAGTTACGAAGGAATATC 19
>seq2581
Length=3237177
Score = 86.0 bits (94), Expect = 9e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 17864 TTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923
||||||||||| || ||||||||||||||||| |||||||| || |||| ||| || |||
Sbjct 741577 TTTTTGTATTCACCTACTTTTTTCTCGAAGAAGTTTGTCTTACCCTCCAGTGAGATAAAA 741518
Query 17924 TTCATAAAATCAAATGGATT 17943
||||| || ||||||||
Sbjct 741517 TTCATGAAGGAGAATGGATT 741498
>seq2856
Length=4748033
Score = 84.2 bits (92), Expect = 3e-11
Identities = 135/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| | || || || |||||||| | || || ||| ||
Sbjct 1620874 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCG 1620933
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || ||| || ||||| |||||||| || || || || || ||
Sbjct 1620934 GATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAG 1620993
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | || || |||||||| |||||| | ||| | ||||||||||
Sbjct 1620994 CAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATA-- 1621051
Query 156003 ATATCCAAAGAGG 156015
||||||||| |||
Sbjct 1621052 ATATCCAAAAAGG 1621064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731844280348000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |