Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3008 149 9e-31 seq2987 111 2e-19 seq1957 87.8 3e-12 seq2581 86.0 9e-12 seq2856 84.2 3e-11 >seq3008 Length=1134530 Score = 149 bits (164), Expect = 9e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| || || ||||| || |||||||| |||||||| | |||| Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| || || ||||||||||| ||||| ||||| || ||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| ||| || ||||| ||||| ||| | ||||||||||| || ||| Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| || | || |||||| | ||| Sbjct 387217 AT-TCAAAAGGAATCTACACTTCATCTTGTG 387188 Score = 132 bits (146), Expect = 7e-26 Identities = 155/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 155799 tataat---aaaaatttatgtaataaaatgcaaatatttattaaaaCATTGACTGGAAAA 155855 |||||| |||| |||| || | |||||| || ||| | || ||||||||||| ||| Sbjct 388795 TATAATTTAAAAATTTTACAGAACACAATGCAGATCTTTGTGAAGACATTGACTGGGAAA 388736 Query 155856 ACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAA 155915 ||||| || | ||||| |||| |||||||| |||| || || ||| ||||| ||| Sbjct 388735 ACTATAACTCTTGAAGTTGAAGCTTCTGATACTATTGAGAATGTAAAAGCCAAAATTCAA 388676 Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975 |||||||| || || || || || || || | ||||||| |||||| || ||||| ||| Sbjct 388675 GATAAAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAA 388616 Query 155976 GATACCAGAACTTTATCAGATTATAATAT 156004 ||| | ||||| || ||||| || || Sbjct 388615 GATGGTCGCACTTTGTCCGATTACAACAT 388587 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || |||||||| || || ||||||||||| | || Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || ||||| || ||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||| || || ||||||||| |||| | |||||||| ||| Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || ||||||||||| || || Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAG 387870 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || ||||| || ||||| ||||||||||||| || Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| ||||| ||||| ||||| ||||| || || Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||| || ||||| ||||| | | || | || ||||| ||| Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || |||||||| ||| Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTA 388100 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 aatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| ||||| ||||| || || || || ||||| |||| || Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || || ||||| ||||| ||||||||||| ||||| || || Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCA 388422 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||||| ||| || || || || |||||| | ||||| || ||||| || Sbjct 388421 GCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAA 388362 Query 156002 TAT 156004 ||| Sbjct 388361 TAT 388359 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | || || ||||| || || | |||||||| |||| Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || ||||||||||| || || || || || || Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||| || ||||| || ||||| | ||||| || ||||||| Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATA-- 387676 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 387675 ATATCCAAA 387667 >seq2987 Length=818656 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 155782 ataaagtatttattgtttataataaaaa--tttatgtaataaa------atgcaaatatt 155833 ||||| || ||| | ||||| |||||| ||| | | || | |||||||| || Sbjct 733065 ATAAAATAATTAATTTTTATTATAAAATATTTTTTCTTTTAGATTCATCATGCAAATCTT 733124 Query 155834 tattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTT 155893 | | || || | |||||||||||||| || | || || |||| |||||| | ||| Sbjct 733125 TGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCTGACACTATAGA 733184 Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 ||| || ||| || || ||||||||||| ||||| ||||| || || || | |||| Sbjct 733185 AAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAGCAGCGTCTGAT 733244 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-- 156011 | || ||||| || | ||||| ||||||| | |||||||||| | ||||||| Sbjct 733245 CTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATA--ACATCCAAAAG 733302 Query 156012 GAGGCGACGCTTCATTTAGTGTT 156034 || | || || ||||| || || Sbjct 733303 GAATCCACACTCCATTTGGTTTT 733325 >seq1957 Length=1295 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139721 AATTATAATATTTTATATCAATATTCGTGTAAATATATAGAGGCATGTCGAATAATATTA 139780 |||| | ||| || | |||||||| |||||||| ||||| |||||| || | |||||| Sbjct 134 AATTTTCATAAACTAAAACAATATTCATGTAAATACATAGAAGCATGTAGACTTATATTA 75 Query 139781 AATTCTAGAGGAAAATTATTAATTTTTGAACCGTTAGTTAATTTTGAAGGAATATC 139836 || || | ||| |||| ||||| | |||||| || || | || ||||||||||| Sbjct 74 AAGTCAAAAGGTAAATGTTTAATATATGAACCATTCGTAAGTTACGAAGGAATATC 19 >seq2581 Length=3237177 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 17864 TTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||||||||| || ||||||||||||||||| |||||||| || |||| ||| || ||| Sbjct 741577 TTTTTGTATTCACCTACTTTTTTCTCGAAGAAGTTTGTCTTACCCTCCAGTGAGATAAAA 741518 Query 17924 TTCATAAAATCAAATGGATT 17943 ||||| || |||||||| Sbjct 741517 TTCATGAAGGAGAATGGATT 741498 >seq2856 Length=4748033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || || |||||||| | || || ||| || Sbjct 1620874 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCG 1620933 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || ||||| |||||||| || || || || || || Sbjct 1620934 GATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAG 1620993 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | || || |||||||| |||||| | ||| | |||||||||| Sbjct 1620994 CAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATA-- 1621051 Query 156003 ATATCCAAAGAGG 156015 ||||||||| ||| Sbjct 1621052 ATATCCAAAAAGG 1621064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844280348000