Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 154 3e-32
seq2856 145 2e-29
seq2987 122 2e-22
seq2838 89.7 1e-12
>seq3008
Length=1134530
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| | ||| || | ||| ||||| | || || |||||||||||||
Sbjct 387624 ATTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCA 387683
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || | || |||| ||| || |||||||| || || | ||| |||||||||
Sbjct 387684 GACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGT 387743
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||||||||| || || ||||||||| |||| ||| || || ||
Sbjct 387744 GGGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCG 387803
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || ||||||||||| || | ||||||| || ||||||||
Sbjct 387804 ACTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 147 bits (162), Expect = 4e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| | || || ||||| | ||| | ||||| || || |||||
Sbjct 387396 ATACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCG 387455
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||||| |||| || | |||||| ||||||||||| || | ||| ||||| ||
Sbjct 387456 GAGAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGA 387515
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| |||||| ||| ||||| |||| |||||| | ||
Sbjct 387516 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCA 387575
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||||| || |||||||| || |||| ||||| | || |||||||||
Sbjct 387576 ACTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626
Score = 140 bits (154), Expect = 6e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|| ||||| ||||||| || || ||| || ||||| || || || || |||| ||
Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| ||||| || ||||| || || | ||| ||||| ||||| || || |||||||||||
Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||||||||| |||| ||| || | ||| ||||| ||||| || |||||
Sbjct 388680 ATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTTC 388739
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| ||||| || | ||| |||||||||
Sbjct 388740 CCAGTCAATGTCTTCACAAAGATCTGCATT 388769
Score = 107 bits (118), Expect = 4e-18
Identities = 168/238 (71%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATAT 192358
|| |||| | || || | |||||| | || | ||| | |||| || ||| || ||||
Sbjct 387161 TTAAATATTTCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGA-ATAT 387219
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || || ||||| || ||| |||| || | ||| || || ||||| || | ||| ||||
Sbjct 387220 TGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTT 387279
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
||||||| || || || ||||||||||| || || || || || || | ||| |
Sbjct 387280 GATCAGGAGGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAG 387339
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| | || ||||| | ||||| || || || ||||| ||||| | || ||||||||
Sbjct 387340 AAGCCTCGACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
>seq2856
Length=4748033
Score = 145 bits (160), Expect = 2e-29
Identities = 142/183 (78%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||||||||| || | || ||| |||| |||| || || ||||| ||||| | ||
Sbjct 1621056 GATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGTCG 1620997
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||||||||| ||||| |||||||| ||||| || ||||||||| |||||
Sbjct 1620996 CTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCTATAGT 1620937
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| ||||||||||| || || ||||| || ||||| || | ||||| | || |||||
Sbjct 1620936 ATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAAATCTG 1620877
Query 192534 CAT 192536
|||
Sbjct 1620876 CAT 1620874
>seq2987
Length=818656
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || |||| |||||| || || ||||| | || | || || ||| ||||||||
Sbjct 733343 ATTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCT 733284
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| | || ||||||||||||||||| ||||| | | ||| ||||||||
Sbjct 733283 GAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGA 733224
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||||||||| || || ||| ||||| ||||| || || | |||
Sbjct 733223 GGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCC 733164
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || ||||| ||||| | || || | ||| || |||||
Sbjct 733163 ACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
>seq2838
Length=268038
Score = 89.7 bits (98), Expect = 1e-12
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||| |||| | || || ||||| ||||| |||| || || ||||||||||| ||
Sbjct 122095 ACCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGA 122036
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | |||| || |||||||| ||||||||||| |||| ||| ||||| |||||
Sbjct 122035 CAAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGG 121976
Query 192429 TATTCCT 192435
||||||
Sbjct 121975 AATTCCT 121969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984441780640500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |