Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3008 158 2e-33 seq2856 143 5e-29 seq2987 113 8e-20 >seq3008 Length=1134530 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | ||| || | ||| ||||| | || || ||||||||||| Sbjct 387624 ATTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCA 387683 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| |||| ||| || ||||||||||| || | ||| || |||||| Sbjct 387684 GACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGT 387743 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || ||||||||| |||||||| || || || Sbjct 387744 GGGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCG 387803 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||||||||| || | ||||||| ||| |||||||| Sbjct 387804 ACTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | || || ||||| | ||| | ||||| ||| || ||||| Sbjct 387396 ATACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCG 387455 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||| |||||||| || || | ||| || || || Sbjct 387456 GAGAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGA 387515 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| ||| ||||| ||||||||||| | || Sbjct 387516 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCA 387575 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| || |||||||| || |||| ||||| | ||| ||||||||| Sbjct 387576 ACTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | || ||||| ||||||| || || ||||| ||||| Sbjct 388311 ATACCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCA 388370 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || | |||||| ||||||||||| |||||||| || || || Sbjct 388371 GACAAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGA 388430 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || ||||| || || ||||| | ||| Sbjct 388431 GGGATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCA 388490 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || ||||| || || || || ||||||| ||| ||||||||| Sbjct 388491 ACTTCCAACGTTATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||| | || ||||| ||||||| || || || || ||||| Sbjct 388539 ATTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCG 388598 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || | ||||| || |||||||| || | ||| || || ||| Sbjct 388599 GACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGT 388658 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| ||||| ||||||||| |||||||| || | ||| Sbjct 388659 GGAATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCA 388718 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||| ||||| ||||| || | || ||||||||| Sbjct 388719 ACTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || |||||||||| ||| | || || | ||| || || |||||||| | ||| Sbjct 387215 AATATTGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCT 387274 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || || || ||||||||||| || || || || || || || Sbjct 387275 TTGTTGATCAGGAGGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGT 387334 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| | ||||| || || || ||||| ||||| | ||| ||||| Sbjct 387335 ATCAGAAGCCTCGACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTG 387394 Query 172067 CAT 172069 ||| Sbjct 387395 CAT 387397 >seq2856 Length=4748033 Score = 143 bits (158), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 |||||||||||||| | || ||| | || |||| || || ||||| || || | || | Sbjct 1621055 ATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGTCGC 1620996 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || |||||||| ||||| |||||||| ||||| || ||||||||| ||||||| Sbjct 1620995 TGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCTATAGTA 1620936 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || ||||||||||| || || ||||| || ||||| || | ||||| | ||| |||||| Sbjct 1620935 TCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAAATCTGC 1620876 Query 172068 AT 172069 || Sbjct 1620875 AT 1620874 >seq2987 Length=818656 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || || || ||||| | || | || || || ||||||||| Sbjct 733343 ATTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCT 733284 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| ||||||||||||||||| || || | | ||| || ||||| Sbjct 733283 GAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGA 733224 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || ||| ||||| |||||| || || | ||| Sbjct 733223 GGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCC 733164 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | || || | || || ||||| Sbjct 733163 ACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905101717974000