Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2963 102 2e-16 seq2907 89.7 2e-12 >seq2963 Length=1349199 Score = 102 bits (112), Expect = 2e-16 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| || | || ||||| || ||| Sbjct 1232154 TCCATAGCCTTTATCAGACGACGCTGGATGTAACCGGTCTCGGCCGTCTTTACGGCGGTA 1232095 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| |||||||| || ||| | | ||| ||| ||| || || Sbjct 1232094 TCGATAAGACCCTCACGACCGCCCATAGCGTGAAAGTAAAACTCCGACGG-CGTGAGACC 1232036 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | ||| | || |||||||| || | |||||| | |||| || | || Sbjct 1232035 GGCGAGGTACGAGTTTTCGACGAAACCGCGAGACTCGGGTCCGTAGTCGTCTTTTATGAA 1231976 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||||||||| || | ||| | || || || || || |||||||| || || Sbjct 1231975 ATGCGGCAGGGTCCTCTTGCGGAAACCGAAGGGTATTCGTTTACCTTCAACGTTTTGTTG 1231916 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| ||| | || | ||| || ||||| Sbjct 1231915 ACCCACGCAAGCGATAACCTGTGAGATATT 1231886 >seq2907 Length=4756786 Score = 89.7 bits (98), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||||||||||||| || || || || |||||||||||||| |||||| | || || | Sbjct 923691 CGATAGTCATACGAGAAGGGATGGCGTGAGGATTGATGATGATATCGGGTGTGAGACCTT 923750 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCCG 251961 | || ||| |||||||||| | | | || || ||| | || |||||||| ||| Sbjct 923751 CGCAAGAGAACGGCATATCCTCCTGC-CTGTACTGAATCCCGCACGTACCCTTTTGACCG 923809 Query 251962 TGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTA 252021 ||||| || ||||| ||||| || ||| || || || || | ||||| ||| Sbjct 923810 TGACGCGACGCAAACTTGTCACCGATCTGCGGAATACGTACGCTGCGCACGCGAATCTTG 923869 Query 252022 CAGAAGTTGTAACCATCACCGTT 252044 || || || || || || | ||| Sbjct 923870 CAAAATTTATAGCCCTCGCTGTT 923892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760461281110