Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2581 280 1e-70 seq2987 105 6e-18 seq3008 100 2e-16 >seq2581 Length=3237177 Score = 280 bits (310), Expect = 1e-70 Identities = 339/457 (74%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| || || |||| ||| ||||||| ||||| || | | | ||| |||| Sbjct 735991 CGGTGGATTCTTCAAGATGTAGGTGTTCAGCTTGTGATTGCTCTCCAAGAGGCCATGATG 735932 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 |||||| ||||||||| | || |||| | ||| || || || | || ||||| Sbjct 735931 ACCGCAGGCTTTGCAGACTTGCGAGATCGTACCCTTCTT--CGAACTGATTATCAGCTCG 735874 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||| ||||| || | ||||| || || | |||||||||||||| || |||| Sbjct 735873 GTCTCCGGATTGTCGCAAGCGGGACATAAAACGTATTTGCGGATGAAACCGTCCAGCAAA 735814 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | || || ||||| || ||||| |||||||| || ||||| ||| | ||| Sbjct 735813 TCCTGCAGTTTCGTGGCATCGTGCGAACCGTTAACGATGAAACGCTCGTTCTTGAAGTCG 735754 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||||| |||||||||| ||||| ||||||||||| |||||||| |||||||||| Sbjct 735753 AATTGCGTCTGCGCGCCCAATTCGCAGCCGAAGTACTTGGTCGGGTATGTGGCCGGACGA 735694 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || | |||||| || | || ||||||||| || || |||||||||||||| ||||| Sbjct 735693 CCGATCGCCTTCGCCACGTCCACCATGTTGACAATCACCGTCTTGATGCCGTTCCCCTTG 735634 Query 34561 CCTTCGACCTTGGCGCAGA-TGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATT 34619 || || ||||| || |||| | |||||||| ||||||||||| || ||||| ||||| Sbjct 735633 CCCTCCACCTTCGC-CAGAATCCGCGGCATCTTGTAGCGGTAAAATGCGTCGCTGACATT 735575 Query 34620 GCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 ||| || ||||| || ||||||| || ||| |||| Sbjct 735574 GCGATTGACGTTTACGCTCCCCATGATGACTGCTGTT 735538 >seq2987 Length=818656 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| | || ||||||||||| || ||||| || || Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | |||||| || || ||||||||||| | || ||||| Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| || || ||||| ||||| |||| |||||| | |||| || || Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| ||||| ||| | ||| |||| || |||| || || || Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGG 733796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| ||||| || ||| | || ||||| ||||| || ||||| || ||| | Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | |||||| || || ||||||||||| | || || Sbjct 733401 TGAC---ACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGA 733457 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || | || |||| || || ||||| ||||| |||| |||||| | | || || Sbjct 733458 TCAGCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTA 733517 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| ||||| || | ||| |||| | | || ||||| |||| Sbjct 733518 TAACATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAA 733570 >seq3008 Length=1134530 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||||||| |||| || |||||||| || | ||| ||| | Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || ||||| || || |||| |||| | | |||||||| Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||| || |||| |||| || || || || || || Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGG 387399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || || || ||||| | ||| ||| || Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || |||||| || ||||| ||| | || |||||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||| || || || || ||||||| | || | | || ||||| Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAAAT 110510 |||||||| |||||||| | || | ||| | | || || || ||||| | | ||| Sbjct 387217 ATTCAAAAGGAATCTACACTTCATCTTGTGCTTCGTCTTCGGGGCGGAAATATTTAAT 387160 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 |||||| || || || ||||| || || || || ||||| || | ||| || || | Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | || || || ||| |||||||||||| | || ||||| Sbjct 388481 A-GACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATC 388423 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||| | |||| ||| || ||||| || || |||| | || || | ||||||| Sbjct 388422 AGCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACA 388363 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | || || || |||||||| ||||| |||| | |||||||| || || Sbjct 388362 ATATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGG 388314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || || || || ||||| || || | ||| || || Sbjct 388769 AATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTC 388710 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | |||||| || ||| || ||||| || | || ||||| Sbjct 388709 TGATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCA 388650 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | |||| ||| || |||||||| || |||| | || || | |||||||| Sbjct 388649 GCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAA 388590 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| |||| | |||||||| || |||| Sbjct 388589 CATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGTGGTGGAA 388540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || || ||||||||| |||| || || |||||||| | ||| || ||| | | Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || || ||| |||||||| ||| | || |||||| Sbjct 388252 -GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCA 388194 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || |||||||| || || | | | ||| | | |||||||| Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||||||||| |||| | || ||| | || || || || Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGG 388086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412826354533790