Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 129 4e-25
seq2856 89.7 3e-13
>seq2987
Length=818656
Score = 129 bits (142), Expect = 4e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808
||||||| | | | ||| |||||||||| ||| ||||| |||||||||||||| |
Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG 733511
Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868
| || | | |||| |||||||| || |||||||| ||||| || ||||| || | |
Sbjct 733510 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAG 733451
Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928
| | || || ||||| | ||||| ||| || | | |||| ||| || ||||
Sbjct 733450 GAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGA 733391
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | || |||||||| ||||| || |||||||||||||| |||||
Sbjct 733390 CTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||| | | || |||| ||| | ||| ||||| |||||||||||||||||
Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | |||| |||||||| || |||||||| ||||| |||||||| || | ||
Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || ||||| | ||||| ||| ||| | | |||| || || |||||
Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || ||||| || || ||||| || || || |||||||||||
Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570
Score = 102 bits (112), Expect = 5e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
||||| || |||||||| || || || | | | || |||| ||| || || ||||||
Sbjct 733304 TCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAG 733245
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
||||| || ||||| || | || | ||||| || || | || || |||||| |
Sbjct 733244 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTT 733185
Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966
|||| | ||| || || || |||| ||| || || ||||| ||||||||||| |||
Sbjct 733184 TCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACA 733125
Query 34967 AAGATCTGCATGAT 34980
||||| ||||||||
Sbjct 733124 AAGATTTGCATGAT 733111
>seq2856
Length=4748033
Score = 89.7 bits (98), Expect = 3e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849
|| || || ||||| || || || | || |||| ||||| ||||| || ||||||||
Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002
Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909
||||| ||||| || | || | ||||| || || | ||| || ||| || | ||
Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCT 1620942
Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|| | || | || || || | ||| || ||||| ||||||||||| ||||| ||
Sbjct 1620941 ATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAA 1620882
Query 34970 ATCTGCATG 34978
|||||||||
Sbjct 1620881 ATCTGCATG 1620873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325680772775570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |