Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2987 129 4e-25 seq2856 89.7 3e-13 >seq2987 Length=818656 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| ||||| |||||||||||||| | Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG 733511 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||||||| || |||||||| ||||| || ||||| || | | Sbjct 733510 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAG 733451 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | ||||| ||| || | | |||| ||| || |||| Sbjct 733450 GAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGA 733391 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| ||||| || |||||||||||||| ||||| Sbjct 733390 CTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||| | | || |||| ||| | ||| ||||| ||||||||||||||||| Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| |||||||| || |||||||| ||||| |||||||| || | || Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | ||||| ||| ||| | | |||| || || ||||| Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||| || || ||||| || || || ||||||||||| Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || |||||||| || || || | | | || |||| ||| || || |||||| Sbjct 733304 TCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAG 733245 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||| || | || | ||||| || || | || || |||||| | Sbjct 733244 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTT 733185 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | ||| || || || |||| ||| || || ||||| ||||||||||| ||| Sbjct 733184 TCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACA 733125 Query 34967 AAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 733124 AAGATTTGCATGAT 733111 >seq2856 Length=4748033 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || || ||||| || || || | || |||| ||||| ||||| || |||||||| Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| ||||| || | || | ||||| || || | ||| || ||| || | || Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCT 1620942 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || | || || || | ||| || ||||| ||||||||||| ||||| || Sbjct 1620941 ATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAA 1620882 Query 34970 ATCTGCATG 34978 ||||||||| Sbjct 1620881 ATCTGCATG 1620873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325680772775570