Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3008 120 5e-22 seq2987 114 2e-20 seq2838 98.7 2e-15 seq2856 93.3 7e-14 seq1957 89.7 8e-13 >seq3008 Length=1134530 Score = 120 bits (132), Expect = 5e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||||||||| || ||||| | || || || | | Sbjct 387396 TGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCTG 387337 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| |||||| |||||||| || ||||||| Sbjct 387336 ATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAAC 387277 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| || ||| | || ||| | || ||| |||| || |||| Sbjct 387276 AAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAATA 387217 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 387216 TTCAAAAGGAATCTAC 387201 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| || || ||||| || ||| |||| || ||| | | Sbjct 388767 TGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTCTG 388708 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||||||| ||||| ||| |||||| || |||||||||||||| | Sbjct 388707 ATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCAGC 388648 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || ||||| | || ||| | | || || | ||||| || | Sbjct 388647 AGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAACA 388588 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| ||| | ||||| || Sbjct 388587 TCCAGAAGGAATCTACTTTGCATTTGGT 388560 Score = 109 bits (120), Expect = 9e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| ||||||| ||||| || || | || || || ||| | Sbjct 387624 TGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCA- 387566 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||||||| | ||||| ||| |||||| ||| |||||||| || || || ||||| Sbjct 387565 GATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 387506 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || |||||| | || ||| | ||||| | | ||||| || Sbjct 387505 CAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAAC 387446 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATT 146242 || ||||||||||| ||| | ||||| || || Sbjct 387445 ATTCAAAAAGAATCCACTCTGCATTTGGTTTT 387414 Score = 104 bits (114), Expect = 4e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| || |||||||| || || || | || || ||| ||| | Sbjct 388539 TGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATCA- 388481 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || ||||| ||| ||||||||||| || || ||||| Sbjct 388480 GACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 388421 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | |||||||| || |||||| | || ||| | | || || | ||||| ||| Sbjct 388420 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAAT 388361 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || ||||| ||| | ||||| || Sbjct 388360 ATCCAGAAGGAATCTACTTTGCATTTGGT 388332 Score = 100 bits (110), Expect = 4e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | ||||| | ||||||||||| || ||| | || || || ||| | Sbjct 388083 TGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA- 388025 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | || || || ||||| || || ||||| || || || |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || |||||| | || ||| | ||||| | ||||||| ||| Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATT 146242 || ||||||||||| ||| | |||||||| || Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTT 387873 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| || || | || || || | | Sbjct 387852 TGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCTG 387793 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||||||| || || ||| |||||| || || ||||| ||||| | Sbjct 387792 ATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAGC 387733 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || || ||| | || || | || || | |||||||||| Sbjct 387732 AGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAATA 387673 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | ||||| ||||| ||| | ||| | || ||| Sbjct 387672 TCCAAAAGGAATCCACTTTGCATCTGGTTTTA 387641 >seq2987 Length=818656 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || |||||||| || || |||| || ||| | | Sbjct 733115 TGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCTG 733174 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| || || ||| |||||| |||||||| || ||||| | Sbjct 733175 ACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAGC 733234 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || || || ||||||||||| || || ||||| | |||||||||| | Sbjct 733235 AGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAACA 733294 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || ||||||| || || || | ||||||| Sbjct 733295 TCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGG 733340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || | || || || || || || | || || ||| | | Sbjct 733343 TGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTCTG 733402 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||||| || |||||||| ||||| || ||||| | Sbjct 733403 ACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAGC 733462 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || || |||||| | || ||| ||||| | |||| ||||| | Sbjct 733463 AGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAACA 733522 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 733523 TTCAAAAGGAATCCAC 733538 >seq2838 Length=268038 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| || || | || ||||| || ||||||||||| ||| ||| Sbjct 121969 AGGAATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAG 122028 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 || || | ||||||||||||||||| ||||| || | || ||||| || || || | Sbjct 122029 GACTTTGTCCGATTATAATATACAAAAGGAATCTACGTTACACTTAGTGTTGCGCTTGCG 122088 Query 146252 AGGAGGT 146258 ||||||| Sbjct 122089 AGGAGGT 122095 >seq2856 Length=4748033 Score = 93.3 bits (102), Expect = 7e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | || || || || ||||| | || |||||| | Sbjct 1620875 TGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCGG 1620934 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||||||| || ||||| |||||| || |||||||| ||||| | Sbjct 1620935 ATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAGC 1620994 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||||||||||| Sbjct 1620995 AGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATAATA 1621054 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 1621055 TCCAAAAAG 1621063 >seq1957 Length=1295 Score = 89.7 bits (98), Expect = 8e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 60826 TGTAGCTATACCTTCAAATGTTACTAATGGCTCATATAATAATACTTTACCTCTTGAATT 60885 ||| | ||| ||||| | |||| ||||| ||||||| ||| ||||||| |||| || Sbjct 15 TGTGGATATTCCTTCGTAACTTACGAATGGTTCATATATTAAACATTTACCTTTTGACTT 74 Query 60886 TAATATAATTTTACAAGCTTCCATATACTTACATGAATATTG 60927 |||||||| | |||| ||||| || || |||||||||||||| Sbjct 75 TAATATAAGTCTACATGCTTCTATGTATTTACATGAATATTG 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786136623947600