Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 167 2e-36
seq2987 159 3e-34
seq2838 86.0 5e-12
>seq3008
Length=1134530
Score = 167 bits (184), Expect = 2e-36
Identities = 167/214 (78%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| |||||||| | || ||||| || || ||||| ||||| | | |||||| |||
Sbjct 388557 AGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCT 388616
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| || ||||| || ||| | ||||| | |||||||| || |||||||||||||| |||
Sbjct 388617 TCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCT 388676
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| |||||| | ||| ||| | || | ||| |||||| ||| |||||||||||||||||
Sbjct 388677 TG-AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGT 388735
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||| ||||| || || || ||||| |||||||||
Sbjct 388736 TTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769
Score = 152 bits (168), Expect = 4e-32
Identities = 162/211 (77%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| || |||||||||||||||||||| ||||| | | || ||| ||| ||
Sbjct 387417 ACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCA 387476
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|||||||| |||||| | ||||| | ||||||||||| || || || |||||||||||
Sbjct 387477 AGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTG- 387535
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | ||||||| | || | ||| || || || ||||| | || || |||||
Sbjct 387536 AATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTT 387595
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| |||| ||||| || || |||||||||
Sbjct 387596 CCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626
Score = 149 bits (164), Expect = 5e-31
Identities = 163/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| |||||||| | || ||||| || || || || ||||| | | |||||| |||
Sbjct 388329 AGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 388388
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| |||||||| |||||| | |||||||| ||||||||||| || || || |||||||||
Sbjct 388389 TCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 388448
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| |||||||| || ||| | || | ||||| || ||| ||||| | ||||| ||
Sbjct 388449 TG-AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGT 388507
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || ||||||||||| || |||||||||
Sbjct 388508 CTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541
Score = 129 bits (142), Expect = 5e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||| ||| | |||||||| ||||| || |||||||| | | ||||| || ||
Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
||||| || |||||| | ||||| | |||||||| || || ||||||||||| |||||
Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTG- 387763
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
||| || | ||| ||| | || | ||| |||||| || ||||| || || || |||||
Sbjct 387764 AATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTT 387823
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || | |||||||| || ||||||||
Sbjct 387824 ACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 129 bits (142), Expect = 5e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|| |||||||| ||||||||||||||||| || ||||| | | || ||| ||| |||
Sbjct 387876 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCG 387935
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|||||||| || ||| | ||||| | || |||||||| || || || || ||||| ||
Sbjct 387936 AGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTG- 387994
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||||| ||||| | || | ||||| || || ||||| | ||| || |||||
Sbjct 387995 AATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTT 388054
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || | ||||| ||||| || |||||
Sbjct 388055 TCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|| ||||| || || |||||||| ||||| || ||||| | || ||||| || ||
Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|| ||||| || ||| | ||||| | ||||||||||| || || ||||||||||||||
Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG- 388222
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||||| || || | || | || || || ||| ||||| | || || || ||
Sbjct 388223 AATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTT 388282
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||| ||||| || || ||||||||
Sbjct 388283 TCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
>seq2987
Length=818656
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | ||||| |||||||| || |||||||| ||||| ||||||||||| |
Sbjct 733341 TCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGA 733282
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || | || || | |||||| ||||| | |||| | |||||||| || ||
Sbjct 733281 AAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGG 733222
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| |||||||| ||||| | || ||||||| |||||| |||||||||| ||| ||
Sbjct 733221 AATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || |||||||| ||||| | ||| || ||||| || |||||
Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||| | |||| ||||| || ||||||||||| |||||||||||||| |||| |
Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | ||| || ||||||||||| || | |||| | ||||||||| || |||
Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| |||||||| || | ||| ||| || |||| | ||||| ||| ||| |||
Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || || |||||||| || | ||||| || || |||||||||
Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569
Score = 147 bits (162), Expect = 2e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | |||||| |||| ||||| |||||||| |||||||||||||| || |
Sbjct 733569 TCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGA 733510
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || | ||| || ||||||||||| || | |||| | |||||||| || ||
Sbjct 733509 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGG 733450
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||| |||||||| || | ||| ||| ||| |||| | ||||||||| ||| ||
Sbjct 733449 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||| || || || || ||||| || | || || ||||| || ||||||
Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
>seq2838
Length=268038
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | ||| |||| ||| || || | ||| ||||| ||||| || |||||||| |
Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | | ||| || | ||||||||||||| | ||||||| |||||||| || |||
Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 121975
Query 29680 ATACC 29684
|| ||
Sbjct 121974 ATTCC 121970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385204974577230
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