Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3008 167 2e-36 seq2987 159 3e-34 seq2838 86.0 5e-12 >seq3008 Length=1134530 Score = 167 bits (184), Expect = 2e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| | || ||||| || || ||||| ||||| | | |||||| ||| Sbjct 388557 AGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCT 388616 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| || ||| | ||||| | |||||||| || |||||||||||||| ||| Sbjct 388617 TCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCT 388676 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| | || | ||| |||||| ||| ||||||||||||||||| Sbjct 388677 TG-AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGT 388735 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| ||||| || || || ||||| ||||||||| Sbjct 388736 TTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 Score = 152 bits (168), Expect = 4e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| || |||||||||||||||||||| ||||| | | || ||| ||| || Sbjct 387417 ACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCA 387476 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| |||||| | ||||| | ||||||||||| || || || ||||||||||| Sbjct 387477 AGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTG- 387535 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||||||| | || | ||| || || || ||||| | || || ||||| Sbjct 387536 AATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTT 387595 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||| ||||| || || ||||||||| Sbjct 387596 CCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 149 bits (164), Expect = 5e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| | || ||||| || || || || ||||| | | |||||| ||| Sbjct 388329 AGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 388388 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || |||||||| |||||| | |||||||| ||||||||||| || || || ||||||||| Sbjct 388389 TCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 388448 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||||| || ||| | || | ||||| || ||| ||||| | ||||| || Sbjct 388449 TG-AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGT 388507 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||||||||| || ||||||||| Sbjct 388508 CTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||| | |||||||| ||||| || |||||||| | | ||||| || || Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| || |||||| | ||||| | |||||||| || || ||||||||||| ||||| Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTG- 387763 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | ||| ||| | || | ||| |||||| || ||||| || || || ||||| Sbjct 387764 AATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTT 387823 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | |||||||| || |||||||| Sbjct 387824 ACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| ||||||||||||||||| || ||||| | | || ||| ||| ||| Sbjct 387876 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCG 387935 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| || ||| | ||||| | || |||||||| || || || || ||||| || Sbjct 387936 AGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTG- 387994 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| ||||| | || | ||||| || || ||||| | ||| || ||||| Sbjct 387995 AATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTT 388054 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| ||||| || ||||| Sbjct 388055 TCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || || |||||||| ||||| || ||||| | || ||||| || || Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || ||||| || ||| | ||||| | ||||||||||| || || |||||||||||||| Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTG- 388222 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| || || | || | || || || ||| ||||| | || || || || Sbjct 388223 AATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTT 388282 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||| ||||| || || |||||||| Sbjct 388283 TCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 >seq2987 Length=818656 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct 733341 TCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGA 733282 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | || || | |||||| ||||| | |||| | |||||||| || || Sbjct 733281 AAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGG 733222 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| |||||||| ||||| | || ||||||| |||||| |||||||||| ||| || Sbjct 733221 AATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| | ||| || ||||| || ||||| Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||| | |||| ||||| || ||||||||||| |||||||||||||| |||| | Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||||||||| || | |||| | ||||||||| || ||| Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| |||||||| || | ||| ||| || |||| | ||||| ||| ||| ||| Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || |||||||| || | ||||| || || ||||||||| Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||| |||| ||||| |||||||| |||||||||||||| || | Sbjct 733569 TCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGA 733510 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || ||||||||||| || | |||| | |||||||| || || Sbjct 733509 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGG 733450 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| |||||||| || | ||| ||| ||| |||| | ||||||||| ||| || Sbjct 733449 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || ||||| || | || || ||||| || |||||| Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 >seq2838 Length=268038 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | ||| |||| ||| || || | ||| ||||| ||||| || |||||||| | Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||||||||||||| | ||||||| |||||||| || ||| Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 121975 Query 29680 ATACC 29684 || || Sbjct 121974 ATTCC 121970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204974577230