Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2927 201 8e-46 seq2939 138 8e-27 seq2953 114 1e-19 seq2959 95.1 9e-14 >seq2927 Length=4912583 Score = 201 bits (222), Expect = 8e-46 Identities = 723/1110 (65%), Gaps = 27/1110 (2%) Strand=Plus/Minus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 |||||||||| || | || || || ||||||||||| || || || || | ||||||| Sbjct 2842704 TACCATTGGCGTCGATGTCGAAGGTAACTTCAATTTGCGGTACGCCCCTAGGCGCAGGTG 2842645 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || | || || || || || | || || | Sbjct 2842644 GTATTCCCGTCAGCTCAAATTTACCAAGGATGTTGTTGTCCTTGGTCATCGCTCTCTCTC 2842585 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG- 281620 ||||| | | ||| ||| ||| | | ||||| || ||||| || ||||| |||| Sbjct 2842584 CCTCGTAGACTTGAATAAGTACTCCCGGCTGATTGTCGGAATACGTGGTAAA-CGTCTGC 2842526 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || || || || ||||| || | || | | ||||||| | ||| ||||| Sbjct 2842525 GTCTGCTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAAGTGGTCATGACACCGCCAGCC 2842466 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | || || || || ||||| || || | || | | || ||||| | |||| Sbjct 2842465 GTCTCAATGCCCAGCGACAGCGGAGTCACGTCCAGCAGAAGCAGATCTTGAACCTCTTCA 2842406 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | || ||||||||||| |||| || || || || |||||||| || || Sbjct 2842405 GACTTGTCGCCGTGCAGAATAGCTGCCTGAACCGCTGCGCCGTAGGCAACAGCCTCGTCC 2842346 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TAC 281859 ||||| | | || ||| |||| || || ||||| |||| | ||| || | ||| | Sbjct 2842345 GGATTGATGGATTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGAAGCAGCT-TCTGAAT 2842287 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAAT-TTCATGCACCTGTGATTTATCCA 281918 ||| || || | | || || || |||| || || | || || |||| || |||| Sbjct 2842286 CTTTGGTATCCTGGTAGAGCCACCGACTAGAACTATGCTTGTGTACTTGTGCCTTGTCCA 2842227 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 || | ||| | |||| || || ||||| || ||| |||| || | | Sbjct 2842226 TCTTCGCGTCCCTCAGCGCTTTCTCCACAGGTTCGAGGGTGCTTCTGAACATATCGGCGC 2842167 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 282036 | ||||| || ||| | || ||||| || ||| | || || || || || ||||||| Sbjct 2842166 AGAGTTCCTCAAATCTGGCCCTAGT--GATGGACGTGTAGAAGTCGATACCCTCGAACAG 2842109 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 || |||| ||||| | | || ||||| || | || | ||| || | || || Sbjct 2842108 CGAGTCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAATGTTCTTTTCGCCCTCTCGCA 2842049 Query 282097 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTT 282154 || ||||| || | || | |||| | || ||| | |||| || |||| || || Sbjct 2842048 GGCCGTCCTCAGGCGTCTCAGGGCTCT--CTTGTTGGTGCTCAAGTCCTTTTTGTACTTC 2841991 Query 282155 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 282214 |||||||| |||| ||| | | || | ||||| ||||| || || || || | Sbjct 2841990 CTCTTGAATTCTTGCACAAAGTGATTCACCATTCGATTGTCAAAGTCCTCTCCGCCGAGA 2841931 Query 282215 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTA 282274 | || | || | ||||| | | || | || | || ||||||| | || | | Sbjct 2841930 TGCGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCTTCAATTGTCAGGATCGAC 2841871 Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGTT 282333 |||||| ||| || ||||||| || || || || || ||| ||| | | || ||| Sbjct 2841870 ACATCAAAGGTACCTCCACCCAAGTCGAAGATCAGGACGTTC--TTC-TCGCCTGAAGTT 2841814 Query 282334 T--TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 | ||||| ||||| ||||| | ||||| || || || || || || || || | |||| Sbjct 2841813 TTCTTATCGAGACCGTACGCTATCGCAGCTGCCGTCGGCTCGTTTATTATCCTGAGAACA 2841754 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||| || || || || || || || ||||| || || ||||| || ||||| Sbjct 2841753 TTCAAACCGGCGATAGCGCCGGCGTCCTTCGTCGCTTGCCTCTGAGAATCATTGAAATAA 2841694 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCCA-ATATAAGCGCTT--GCTGT 282507 || || ||||| || ||||| | || || |||| ||| |||| |||| || || Sbjct 2841693 GCTGGTACAGTGATGACGGCGTTCGTAACAGTCTTGCCCAGATAT----GCTTCCGCCGT 2841638 Query 282508 TTGTTTCATTTTACTTAAAATCATTGATGA 282537 || ||||| || | |||| ||| || || Sbjct 2841637 TTCCTTCATCTTCGTCAAAACCATAGAGGA 2841608 >seq2939 Length=1430158 Score = 138 bits (152), Expect = 8e-27 Identities = 139/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 637113 AAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACA 637172 ||||||| | ||||| |||| ||| ||| ||| ||||||| ||||||||| | ||||| Sbjct 977501 AAAGAAAGTGATTGTGGATTTTTCGAGTCCCAATGTTGCTAAGGAAATGCATGTAGGACA 977442 Query 637173 TTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACG 637231 ||||||||| ||||| ||||| || ||||| |||| | |||||| | | | || |||| Sbjct 977441 TTTAAGATCGACTATAATTGGAGAGAGTATTTCTAGGCTTTTAGAA-TATTTAGAGCACG 977383 Query 637232 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||| | | | |||||||| ||||||||||| || || || ||||||||||| || Sbjct 977382 ATGTGTTAAGACTCAATCATGTAGGTGATTGGGGCACACAGTTTGGTATGTTAATAGC 977325 >seq2953 Length=635362 Score = 114 bits (126), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | || || |||| ||||| || |||||||| ||||| | Sbjct 617532 TTTATCTTCCTGTTTATCCATGCCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 617473 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 || | || || | |||| ||| || |||||||| |||||||||| ||| ||||| Sbjct 617472 TCGAAGCACGTTCAATCCAGAAATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATC 617413 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT----TCTTTTCCAATATAAG 282497 ||||||||| || || ||||||||||| |||| | | ||| | ||| | |||| Sbjct 617412 GTTAAAATACGCTGGTACAGTAATAACCGCATTTTTCACTGAAGTATTT----AAGTAAG 617357 Query 282498 CGCTTGCTGTTTGTTTCATTTT 282519 | |||||||| ||||||||| Sbjct 617356 CCGCTGCTGTTTCTTTCATTTT 617335 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||||||||||| || ||||| |||||||| ||||||| | ||| || | || || | | Sbjct 617510 CCGTATGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACTCGAAGCACGTTCAATCCAGAA 617451 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | ||| ||| || ||||||| || | || |||||||| |||||||||||| Sbjct 617450 ATCTGCCCAGCATCTTTTGTGGCTTGTCGTTGAGAATCGTTAAAATACGCTGGTACAGTA 617391 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 617390 ATAACCGCATTTTT 617377 Score = 87.8 bits (96), Expect = 1e-11 Identities = 182/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||| ||||| | ||| ||||| ||||| ||||| || || |||||| | |||||| Sbjct 618846 ATACCATTCGCATCAATATCGAATGTTACTTCTATTTGTGGTACACCTCTCGGTGCAGGT 618787 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||||| ||| || || ||||| |||| | || ||| || Sbjct 618786 GGGATACCAATGAGACTAAATTGTCCAAGGAGTTTGTTATCATTAGCCATTTCTCGCTCG 618727 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || | || || || |||| ||||||| ||||| | || | ||||||| || Sbjct 618726 CCTTGATGAACTTTAATTTCAACTTGAGTTTGACCATCTGCAGCTGTAGAAAATACT-TG 618668 Query 281621 GAT-TTTTTACAAGGAATTGTTGTGTTTCTA-TCAATAATATTGGTCATAATACCACCAG 281678 | ||||| ||| || |||||||| | | | |||| || || | | ||||||| Sbjct 618667 ACTCTTTTTCGTAGGTATAGTTGTGTTACGAGAGATTAATCTT-GTGAATACACCACCAA 618609 Query 281679 CTGTTTCTAAACC--AAGAGAAAGA 281701 |||||| | ||| | ||||||| Sbjct 618608 GTGTTTCGATACCTATAAAGAAAGA 618584 >seq2959 Length=3411269 Score = 95.1 bits (104), Expect = 9e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 399295 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 399354 |||||||| ||||| || || | || ||| ||||| ||| || |||||| | || || Sbjct 2912293 ATTTCTGTGTGGAACAACGGGAAGGGCATTCCTGTAGTAATACACAAAGAAGAAAAAATG 2912352 Query 399355 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 399414 | ||||| | |||||||| || | ||| | || || ||||||||||| | | ||| Sbjct 2912353 TATGTACCCACCATGATTTTCGGTCACCTTCTGACATCATCTAATTACGATGACGAAGAG 2912412 Query 399415 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 399466 |||||| |||||| | |||||||| || || ||||| |||||||| Sbjct 2912413 GAAAAAGTGACTGGTGGCAGAAATGGTTACGGTGCCAAGCTGTGTAATATTT 2912464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740481639804780