Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 132 5e-26
seq2987 122 9e-23
>seq3008
Length=1134530
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | || ||||||||||| | ||||||||||| || || |||||||||
Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||||| |||||| || ||||| || ||| |||||| ||| |||||||| |||||
Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
||||| |||||||| ||||||| || | | || | || |||| | ||| |||
Sbjct 388206 ATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACT 388265
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | || | ||||| || || | ||||| ||||| || ||||||
Sbjct 388266 TCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCATA 388313
Score = 123 bits (136), Expect = 2e-23
Identities = 160/219 (73%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 137256
|||||||||||||| || ||||||||||| || |||||||| | | | | ||||
Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATC--TGAGAGCGTTCGACCA 387929
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
|||||||||||||| || ||| |||||| ||| || ||||| ||||| || ||||| |||
Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| ||||||| || | | || | ||||||| | || ||||| | ||| |
Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|| || || || | ||||| || || ||||||||| ||
Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCATACCT 388088
Score = 118 bits (130), Expect = 1e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261
||| ||||| | |||||||| || || || |||||||| || |||| |||||
Sbjct 388331 AACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTC 388390
Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321
|||||||| |||||| | |||| | |||||||| ||||| ||||||||||||||
Sbjct 388391 AAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTG 388450
Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381
||||||| || | | || | ||||||| | ||| ||||| | || | |||||
Sbjct 388451 AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510
Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| ||||| ||||| ||||| || |||||
Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540
Score = 116 bits (128), Expect = 4e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 137256
|||||| ||||| | || ||||||||||| |||||||||||| | || ||||
Sbjct 387413 CAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGT--TCGACCA 387470
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| |||||||| |||||| |||||| ||| |||||||| ||||| || |||||||||
Sbjct 387471 TCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTG 387530
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| |||||| ||| | | || | || |||| | || ||||| | || |
Sbjct 387531 TCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATG 387590
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| || || || | ||||| ||||| || |||||
Sbjct 387591 GTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261
||| ||||| | |||||||| || || |||||||||||| || |||| |||||
Sbjct 388559 AACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTC 388618
Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321
|| ||||| || ||| | |||| ||| ||||||||||| || || || ||||| ||
Sbjct 388619 AAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTG 388678
Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381
|||||| ||||| | || | || || | | ||| ||||||| ||| | || ||
Sbjct 388679 AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738
Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| |||||||| || || || || |||||
Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCAT 388768
>seq2987
Length=818656
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | ||||||||| ||||| | ||| ||||| ||||| ||||| |||||
Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || |||||| | |||||||||||| |||||||||| |||||||| |||||
Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
||||| ||||| || || || ||| | | ||| | ||||| | | ||| ||
Sbjct 733220 ATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACC 733161
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| || | || || || || | || || || || ||||||||
Sbjct 733160 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | ||||| || | |||| ||| ||||| ||||| ||||| || ||
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| || || | |||||||| |||||||| |||||
Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||||| ||||| | ||| | |||||| | | ||| |||
Sbjct 733448 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACT 733389
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | |||||||| || | || ||||| || ||||||||
Sbjct 733388 TCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | |||||||| || || | || ||||| ||||| ||||| || ||
Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| || || | ||||||||||||||||| |||||
Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||||| ||||| | ||| | |||||| | | ||| |||
Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | || ||||| || | |||||| ||||| || |||||
Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488525496396000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |