Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 187 5e-42
seq2987 163 6e-35
seq2856 131 3e-25
seq2838 122 2e-22
>seq3008
Length=1134530
Score = 187 bits (206), Expect = 5e-42
Identities = 169/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| || |||| ||||||||| ||||| ||||| |||||||| | | | | ||| |||
Sbjct 388329 AGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 388388
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| ||||||||||||||||| || | ||| || ||||| ||||| || ||||| || |||
Sbjct 388389 TCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 388448
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
||||| ||||| || ||||| || || || || | ||| |||||||| ||||| |||
Sbjct 388449 TGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTC 388508
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| |||||||| || || || || |||||||||
Sbjct 388509 TTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| || |||| ||||||||| ||||| || || ||||| || | | | | ||| |||
Sbjct 388557 AGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCT 388616
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| || |||||||| ||||| || | | || ||||| || || || || || ||||||
Sbjct 388617 TCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCT 388676
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
||||| || ||||||||||| ||||| |||||| || ||| ||||| | |||||| ||
Sbjct 388677 TGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTT 388736
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| || ||||| ||||| ||||| |||||||||
Sbjct 388737 TTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || || |||||||| || || ||||| || || |||| | | | ||
Sbjct 387182 ACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCC 387241
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || ||||| || || ||||| || |||||||||||||| ||||| || || || ||
Sbjct 387242 ATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTT 387301
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||||||| || || || ||||| |||||| || || |||||||| || ||
Sbjct 387302 ATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAAT 387361
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| ||||| || || || || || ||||||||
Sbjct 387362 CGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
Score = 161 bits (178), Expect = 2e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | || | |||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 388084 TACCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGG 388143
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | |||||||| || |||||||| |||||||| | | || ||||| ||||
Sbjct 388144 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 388203
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || || || |||||||| ||||| || || || ||||| ||||| | ||| |
Sbjct 388204 GGATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGA 388263
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || ||||| ||||| | || || || || ||||||||
Sbjct 388264 CTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Score = 156 bits (172), Expect = 8e-33
Identities = 163/214 (76%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|| ||| || |||||||| |||||||| || || || ||||| || || ||| ||| ||
Sbjct 387413 CAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATC 387472
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
||| |||||||||||||||||||| | | || ||||| ||||| |||||||| || ||
Sbjct 387473 TTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTC 387532
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
|||||| || ||||| ||||| || || ||||| | || ||||| || || || ||
Sbjct 387533 TTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGT 387592
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| ||||| | || || || || |||||||||
Sbjct 387593 TTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|| |||||| || ||||| |||||||| || ||||| ||||| || || ||| ||| ||
Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATC 387931
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
||| ||||||||||| |||||||| | | |||||||| ||||| ||||||||||| ||
Sbjct 387932 TTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTC 387991
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
||||| ||||| || || || || || || || | || ||||| ||||| || ||
Sbjct 387992 CTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGT 388051
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| | || || ||||| || |||||
Sbjct 388052 TTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|||| ||| ||||| || || |||||||||||||| | | | | |||||||| |||||
Sbjct 387651 TGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCCAGTTGC 387710
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
||||||||||| || | | || ||||| || || || || || ||||||||||||||
Sbjct 387711 TTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGAATCTTG 387770
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
||||||||||| ||||| |||||| || || ||||||| || || || || || ||
Sbjct 387771 GCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTACCGGTA 387830
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || || || || ||||||||
Sbjct 387831 AGAGTTTTAACGAAAATCTGCAT 387853
>seq2987
Length=818656
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||||| | |||||| || | ||| || || ||||| || || || ||||| || ||
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| |||| || ||||| |||||||| || || || || || | || ||||| |||||
Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || || || || || |||||||||||||| ||||| ||| || ||| |||
Sbjct 733448 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACT 733389
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | || || |||||||| || | ||||||||||| || ||||||
Sbjct 733388 TCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
>seq2856
Length=4748033
Score = 131 bits (144), Expect = 3e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680
|||| || ||||||||||| || ||| | | || ||||| || || || ||||| ||||
Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004
Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740
| |||| || ||||| || || ||||| || ||||| || ||||| |||||||||||||
Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944
Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
| || ||||| | |||||| || | || || ||||| || || | || ||||| |
Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884
Query 82801 ATATCTGCAT 82810
| ||||||||
Sbjct 1620883 AAATCTGCAT 1620874
>seq2838
Length=268038
Score = 122 bits (134), Expect = 2e-22
Identities = 103/127 (81%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||||| ||| |||| |||||||| | |||||||| || |||||||||||||| ||
Sbjct 122095 ACCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGA 122036
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| | | ||||| ||||||| |||||| ||||||||||| | || || |||||||| ||
Sbjct 122035 CAAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGG 121976
Query 82703 TATTCCT 82709
||||||
Sbjct 121975 AATTCCT 121969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981789083627170
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