Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3008 104 2e-17 >seq3008 Length=1134530 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || ||||||||||| | ||| ||| | || ||||| Sbjct 387879 AAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCA-TCTTCGAG 387937 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | ||||| || || |||||||| ||||||||||| ||| Sbjct 387938 TTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTC-CTGAA 387996 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||||| | ||| | ||||| | | ||| || || | |||| |||||| | Sbjct 387997 TTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTTTC 388056 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| || ||||| ||||| Sbjct 388057 CTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || || ||||||||| | ||| ||| | || || || Sbjct 387420 AAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCA-TCTTCAAG 387478 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | |||||||| || |||||||| ||||| ||||| ||| Sbjct 387479 TTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCT-TGAA 387537 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | || || | | ||| || || | |||| |||||| | Sbjct 387538 TTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTTCC 387597 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| |||||||||||||| Sbjct 387598 CTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || |||||||| |||||||||||| | ||| ||| || ||| Sbjct 388107 AAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCAAGC 388166 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | |||||||| || ||||||||||| || ||||| ||| Sbjct 388167 TGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTC-TTGAAT 388225 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||| ||| | | ||||| || || | | || || || | || | ||| || || Sbjct 388226 TTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTTCC 388285 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| |||||||||||||| Sbjct 388286 TGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||||||||| || ||| ||| | || || || Sbjct 388335 AAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCA-TCTTCAAG 388393 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | | |||||| || |||||||||||||| ||||| ||| Sbjct 388394 TTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTC-TTGAA 388452 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | ||| | ||||| | | || || || | || | ||| || | Sbjct 388453 TTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTTC 388512 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| |||||||||||||| Sbjct 388513 CTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || || || ||||| ||||| || ||| | ||| || || ||||| || Sbjct 387657 GTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCA 387716 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | |||||||| || || ||||| || || || || ||||| || Sbjct 387717 GCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGAATCTTGGCTTTT 387776 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| || || | | ||| || || | |||| |||||| ||||| |||||| Sbjct 387777 ACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTACCGGTAAGAGTT 387836 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 387837 TTAACGAAAATCTGCAT 387853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402490437200