Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2812 89.7 1e-12 >seq2812 Length=584538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 165/237 (70%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTA---AATGTGGTTGAGGTGCAAGT-GTAAT 72224 || |||||||||||||| ||||| || | | || ||| || | ||| ||||| Sbjct 464109 ACATTGCCAAACACAACATGTTTATTGTCCAGCCAAGGTGTTT----TTATAGTAGTAAT 464164 Query 72225 GAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTC 72284 || ||||| ||| ||||||| | || || ||||||||||| || | | ||| | | Sbjct 464165 AAAAAATTGTGAGCTATTTGAGTTTGGGCCAGAGTTAGCCATTGACAGTATACCACCACC 464224 Query 72285 TGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCAT--ATATACTTT-GACC 72341 | |||||| | | || |||||||||||||| | ||||||| ||| ||||| ||| Sbjct 464225 AGTATGCTTGAGTTCAAAGTTCTCATCTTCAAATTTATCTCCATAGATAGACTTTCCACC 464284 Query 72342 TGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398 || | |||| | ||||||||||||||| ||||||||| |||||| Sbjct 464285 TG---TACCATTGTGATGTGTGATATCACCTCCTTGACACATAAAATTGGGAATTAC 464338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186766725701830