Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3008 143 2e-29 seq2987 104 2e-17 >seq3008 Length=1134530 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| |||||| |||||||| ||||||||||||||||| || || | || Sbjct 387414 AAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCT 387473 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||||||| ||||| ||||||||||||||||| | || | ||||||||||| Sbjct 387474 TCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCT 387533 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | || |||| || | || || || || || || | |||||| || Sbjct 387534 TGAATTTT-AGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGT 387592 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||||| ||||| || || |||||||| Sbjct 387593 TTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || ||||| ||||| ||||| || || ||||||||||| |||||||| || Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | |||||||||||||| ||||||||||||||||| | || | || |||||| Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| || | ||| | || | || || || ||| || || | ||| || Sbjct 388218 TCTTGAATTTT-TGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAAT 388276 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || ||||||| ||||| || || ||||||||| Sbjct 388277 GGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCATA 388313 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| |||||| |||||||| || |||||||| ||||| || || | || Sbjct 387873 AAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCT 387932 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||||||||||||| ||||||||||| ||||| | || | ||||| ||||| Sbjct 387933 TCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCC 387992 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| || | || | || | ||||| || || || || | ||||| || Sbjct 387993 TGAATTTT-TGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGT 388051 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| ||||| | ||||| ||||| || |||||| Sbjct 388052 TTTTCCTGTAAGAGTTTTCACAAAAATTTGCATA 388085 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | ||| || || || |||||||||||||| | ||||| | || || Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||||||||||||||||||||||| | || | ||| ||||| || | Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | || |||| || | || || | ||| || |||| || || ||||| Sbjct 388680 ATTTT-GGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || || || || || |||||||||||||| || Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCATTGT 388771 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 ||| |||| ||| | |||| || ||||| || || ||||| || | ||||| |||| Sbjct 387641 TAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTC 387700 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||| ||| ||||| ||||||||||||||||||||||| | || | ||| ||||| || Sbjct 387701 TTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATC 387760 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 ||| || | || |||| || | || || || || || || | |||||| | Sbjct 387761 TTGAATCTT-GGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGG 387819 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||| || | ||||| || || ||||||||| Sbjct 387820 TTTTACCGGTAAGAGTTTTAACGAAAATCTGCATA 387854 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | ||| || || || || |||||||| || | ||||| | || || Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| ||||||||||| | ||||||||| | || | ||||||||||| | Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || | ||||| || | ||||| || ||| || || | ||| || || || Sbjct 388452 ATTTT-TGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || ||||| || || |||||||| Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 >seq2987 Length=818656 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| || || ||| || ||||| ||||| || || || || || | | Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| |||||| ||||| ||||||| ||| |||||||| | || | |||||||||| Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| | || || | || | |||||| | ||| || || | ||||| Sbjct 733664 TCCTGGATTTT-GGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGAT 733606 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||||| | ||||| || ||||||||||| Sbjct 733605 GGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || |||||||| || ||| || ||||| ||||| ||||| || Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| ||||||||||| || || || |||| |||||||||||| | || Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || | || |||| || | ||||| | |||||| Sbjct 733220 ATGCCCTCTTTATCTTGGATCTT-GGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | || || |||||||| ||||| Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| || || ||| || ||||| ||||| || || || Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| |||||| ||||| ||||||| |||||||||||| | || Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||||| | || |||| || | ||||| | ||| || Sbjct 733448 ATACCTTCTTTGTCCTGGATTTT-GGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || ||||||||||| ||||| Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691861577600