Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 143 2e-29
seq2987 104 2e-17
>seq3008
Length=1134530
Score = 143 bits (158), Expect = 2e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| |||||||| |||||| |||||||| ||||||||||||||||| || || | ||
Sbjct 387414 AAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCT 387473
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|| | ||||||||| ||||| ||||||||||||||||| | || | |||||||||||
Sbjct 387474 TCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCT 387533
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|||||| | || |||| || | || || || || || || | |||||| ||
Sbjct 387534 TGAATTTT-AGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGT 387592
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||| ||||||| ||||| || || ||||||||
Sbjct 387593 TTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 132 bits (146), Expect = 3e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594
||||| || ||||| ||||| ||||| || || ||||||||||| |||||||| ||
Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157
Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654
|| || | |||||||||||||| ||||||||||||||||| | || | || ||||||
Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217
Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713
|| |||||| || | ||| | || | || || || ||| || || | ||| ||
Sbjct 388218 TCTTGAATTTT-TGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAAT 388276
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || ||||||| ||||| || || |||||||||
Sbjct 388277 GGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCATA 388313
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| || ||||| |||||| |||||||| || |||||||| ||||| || || | ||
Sbjct 387873 AAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCT 387932
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|| | ||||||||||||||| ||||||||||| ||||| | || | ||||| |||||
Sbjct 387933 TCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCC 387992
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|||||| || | || | || | ||||| || || || || | ||||| ||
Sbjct 387993 TGAATTTT-TGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGT 388051
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||| ||||| | ||||| ||||| || ||||||
Sbjct 388052 TTTTCCTGTAAGAGTTTTCACAAAAATTTGCATA 388085
Score = 116 bits (128), Expect = 2e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| | ||| || || || |||||||||||||| | ||||| | || ||
Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| |||||||||||||||||||||||||||||||| | || | ||| ||||| || |
Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| | || |||| || | || || | ||| || |||| || || |||||
Sbjct 388680 ATTTT-GGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| || || || || |||||||||||||| ||
Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCATTGT 388771
Score = 111 bits (122), Expect = 1e-19
Identities = 155/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596
||| |||| ||| | |||| || ||||| || || ||||| || | ||||| ||||
Sbjct 387641 TAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTC 387700
Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
|||| ||| ||||| ||||||||||||||||||||||| | || | ||| ||||| ||
Sbjct 387701 TTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATC 387760
Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715
||| || | || |||| || | || || || || || || | |||||| |
Sbjct 387761 TTGAATCTT-GGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGG 387819
Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||||| || | ||||| || || |||||||||
Sbjct 387820 TTTTACCGGTAAGAGTTTTAACGAAAATCTGCATA 387854
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| | ||| || || || || |||||||| || | ||||| | || ||
Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||| ||||||||||| | ||||||||| | || | ||||||||||| |
Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| || | ||||| || | ||||| || ||| || || | ||| || || ||
Sbjct 388452 ATTTT-TGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||||| || ||||| || || ||||||||
Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540
>seq2987
Length=818656
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594
|| || ||||| || || ||| || ||||| ||||| || || || || || | |
Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725
Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654
|| |||| |||||| ||||| ||||||| ||| |||||||| | || | ||||||||||
Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665
Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713
|| ||||| | || || | || | |||||| | ||| || || | |||||
Sbjct 733664 TCCTGGATTTT-GGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGAT 733606
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||||| ||||| | ||||| || |||||||||||
Sbjct 733605 GGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| || |||||||| || ||| || ||||| ||||| ||||| ||
Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || | |||| ||||||||||| || || || |||| |||||||||||| | ||
Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || ||||| || || || | || |||| || | ||||| | ||||||
Sbjct 733220 ATGCCCTCTTTATCTTGGATCTT-GGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| ||||| || || | || || |||||||| |||||
Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| || || ||| || ||||| ||||| || || ||
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || | | || |||| |||||| ||||| ||||||| |||||||||||| | ||
Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||||||| ||||| | || |||| || | ||||| | ||| ||
Sbjct 733448 ATACCTTCTTTGTCCTGGATTTT-GGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || || || | || ||||||||||| |||||
Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328691861577600
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