Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3008 113 1e-19 >seq3008 Length=1134530 Score = 113 bits (124), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| |||||||| ||||| || || |||||| |||| Sbjct 388069 AAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCAGACACAATCGAGAAC 388010 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || ||| ||| ||||| || || |||||||| ||||| |||| || || ||| Sbjct 388009 GTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGA---TCAACAGCGTTTGATC 387953 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || |||||||| || | |||||||| | || | | |||||||| | || ||||| Sbjct 387952 TTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAATATTCAAAAAGAA 387893 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| | |||||||| ||||| Sbjct 387892 TCCACTCTTCATTTAGTTTTGAGGCTTCG 387864 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | |||||||| ||||| || |||||||| || |||||| Sbjct 387394 CAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCTGAT 387335 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| ||||| || ||| || || ||| Sbjct 387334 ACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAACAA 387275 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || || || || ||||| | || |||||| | ||||| | || ||||| | Sbjct 387274 AGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAATATT 387215 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || ||||| ||||| ||||| Sbjct 387214 CAAAAGGAATCTACACTTCATCTTGT 387189 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || ||||| ||||| ||||| || ||||| || || || Sbjct 387622 CAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCAGAT 387563 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| |||||||| ||||||||||| ||||| || Sbjct 387562 ACTATCGAGAATGTCAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCGGATCAGCA 387504 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || ||||| || | |||||||| | || | ||||||||||| | Sbjct 387503 GCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAACAT 387444 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || ||||| || | |||||||| ||||| Sbjct 387443 TCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCG 387405 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| || ||| | ||||| ||| |||||| Sbjct 388765 CAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTCTGAT 388706 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || ||||| || ||| |||||||| ||||| || ||| || || || Sbjct 388705 ACTATTGAGAATGTAAAAGCCAAA-ATTCAAGATAAAGAGGGTATTCCACCCGATCAGCA 388647 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || |||||||| ||| | |||||||| | |||||| ||||||||||| | Sbjct 388646 GCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAACAT 388587 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || |||||| | || | ||| | ||||| || Sbjct 388586 CCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCG 388548 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| ||||||| || |||||| || | || Sbjct 387838 AAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCTGATACTATTGAGAAT 387779 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||||||||| ||||| || || || || || | | || || Sbjct 387778 GTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAGCAGCGTTTGATTTTT 387719 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||| || | |||||| | ||||| || |||| || || || Sbjct 387718 GCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAATATCCAAAAGGAATCC 387659 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || || ||||| || ||||| Sbjct 387658 ACTTTGCATCTGGTTTTAAGGCTTCG 387633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181774919500630