Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 113 1e-19
>seq3008
Length=1134530
Score = 113 bits (124), Expect = 1e-19
Identities = 152/209 (73%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || ||||||||||| |||||||| ||||| || || |||||| ||||
Sbjct 388069 AAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCAGACACAATCGAGAAC 388010
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301
|| ||| ||| ||||| || || |||||||| ||||| |||| || || |||
Sbjct 388009 GTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGA---TCAACAGCGTTTGATC 387953
Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
|| |||||||| || | |||||||| | || | | |||||||| | || |||||
Sbjct 387952 TTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAATATTCAAAAAGAA 387893
Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| | |||||||| |||||
Sbjct 387892 TCCACTCTTCATTTAGTTTTGAGGCTTCG 387864
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | |||||||| ||||| || |||||||| || ||||||
Sbjct 387394 CAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCTGAT 387335
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||||||| ||||| || ||| || || |||
Sbjct 387334 ACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAACAA 387275
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| || || || || ||||| | || |||||| | ||||| | || ||||| |
Sbjct 387274 AGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAATATT 387215
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|| || || ||||| ||||| |||||
Sbjct 387214 CAAAAGGAATCTACACTTCATCTTGT 387189
Score = 104 bits (114), Expect = 6e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| || ||||| ||||| ||||| || ||||| || || ||
Sbjct 387622 CAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCAGAT 387563
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| ||| |||||||| ||||||||||| ||||| ||
Sbjct 387562 ACTATCGAGAATGTCAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCGGATCAGCA 387504
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | ||||| || ||||| || | |||||||| | || | ||||||||||| |
Sbjct 387503 GCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAACAT 387444
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| || ||||| || | |||||||| |||||
Sbjct 387443 TCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCG 387405
Score = 100 bits (110), Expect = 7e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | || || ||||| || ||| | ||||| ||| ||||||
Sbjct 388765 CAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTCTGAT 388706
Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || ||||| || ||| |||||||| ||||| || ||| || || ||
Sbjct 388705 ACTATTGAGAATGTAAAAGCCAAA-ATTCAAGATAAAGAGGGTATTCCACCCGATCAGCA 388647
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | || || |||||||| ||| | |||||||| | |||||| ||||||||||| |
Sbjct 388646 GCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAACAT 388587
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||| || |||||| | || | ||| | ||||| ||
Sbjct 388586 CCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCG 388548
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || ||||| ||||| ||||||| || |||||| || | ||
Sbjct 387838 AAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCTGATACTATTGAGAAT 387779
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| ||||||||||| ||||| || || || || || | | || ||
Sbjct 387778 GTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAGCAGCGTTTGATTTTT 387719
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| |||||||| ||||||| || | |||||| | ||||| || |||| || || ||
Sbjct 387718 GCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAATATCCAAAAGGAATCC 387659
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||| | || || ||||| || |||||
Sbjct 387658 ACTTTGCATCTGGTTTTAAGGCTTCG 387633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181774919500630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |