Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3008 127 2e-24 seq2987 91.5 1e-13 seq2856 84.2 2e-11 >seq3008 Length=1134530 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | || ||||||||||||||||| ||| | || || ||| Sbjct 387413 CAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATC 387472 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || ||||| || | | |||| | |||||| ||||| ||||| || |||||||| || Sbjct 387473 TTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTC 387532 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | || | |||||| | | ||| ||||| | ||| | || Sbjct 387533 TTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGT 387592 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || |||||||| | |||||||||||| Sbjct 387593 TTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| ||||| | | || ||||| ||||| ||||| ||| | || || Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | |||||| ||||| ||||| ||||| ||||| Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 388218 TCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATG 388277 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | |||||||||||| Sbjct 388278 GTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| ||||| | | || ||||||||||| ||||| || | || || ||| Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATC 387931 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||| ||||| |||| | |||| | |||||||||||| ||||| || ||||| || || Sbjct 387932 TTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTC 387991 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| || | | || | || || | | ||| ||||| | || | || Sbjct 387992 CTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGT 388051 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || |||||||| | ||||| ||||| Sbjct 388052 TTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||||| ||| | | || || ||||| || || || || || || ||| ||| Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || || || || || | | | || | |||||| ||||| || || || || |||||||| Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| || ||| | | || | |||||| | | ||| ||||| | ||| | ||| Sbjct 387762 TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTT 387821 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||||||| | |||||||||||| Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | || || ||| ||||| || || || | | Sbjct 387204 GATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCA 387263 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | |||||||| ||||| ||||| |||||||| ||| ||| |||| Sbjct 387264 AAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACG 387323 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| ||||| | || | ||| || || || | |||||| Sbjct 387324 TTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTG 387383 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 387384 ACGAAAATCTGCAT 387397 >seq2987 Length=818656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | || || ||||||||||| ||||| | || | | Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| |||| | || ||||| || ||||| ||||| || |||||||| Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || |||| | || ||||||| || | Sbjct 733664 TCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATG 733605 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||| | ||| |||||||| Sbjct 733604 GTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 >seq2856 Length=4748033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| || || || || | ||||| |||||| ||||| || || | ||| Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || ||||| ||||| || || || || |||||||| || || ||| | | || Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | || || || |||| || | || ||||| || || ||||||| || Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 132114 AAATCTGCATG 132124 ||||||||||| Sbjct 1620883 AAATCTGCATG 1620873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476593148350800