Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 127 2e-24
seq2987 125 6e-24
>seq3008
Length=1134530
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | || |||||| | ||||| | |||||||| ||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || |||||| | || || ||||||| || || || || || || || |||||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | || | | ||| |||||||||||||||| | ||| || |||||||||
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
||||||||||||||||| |||||||||| || ||
Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAG 387870
Score = 122 bits (134), Expect = 8e-23
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228
|||| ||||| | ||||| || ||||| || || ||| | || || | ||||| |||
Sbjct 388774 AACACAATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAA 388715
Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288
|| |||||||| ||| | |||||| |||||| |||||||||||||| || |||
Sbjct 388714 GCTTCTGATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCC 388655
Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348
|||||||| | | |||| | ||| ||||| || ||||||| | | | | | ||||
Sbjct 388654 GATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGAT 388595
Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403
||||| || || || ||||| || | ||||| || | ||| || | || ||||
Sbjct 388594 TACAACATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGTGGTGGAA 388540
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| |||| || ||| | |||||| | ||||| || ||
Sbjct 387625 ATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCA 387566
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||||||| | || ||| |||||| || ||||| || || || || ||||||
Sbjct 387565 GATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 387506
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | || | | || |||||||| ||||||| | ||| || |||||||||
Sbjct 387505 CAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAAC 387446
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
||||||||||||||||| | ||||| || || ||
Sbjct 387445 ATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAG 387411
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||| ||||| |||| || | |||||||| ||
Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || ||| | || || ||| ||| ||||||||||| || || || |||||
Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| |||| | ||||| |||||||| |||| | | | | || ||||||
Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||||| ||||| || ||||| | |||
Sbjct 387217 ATTCAAAAGGAATCTACACTTCATCTTGTG 387188
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| | ||||| ||| | |||||| | |||||||| |
Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| ||| | |||||| || ||| |||||||||||||| || || ||||||
Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | |||| | || || ||||| ||||| | | | | | ||||| |||
Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
|| ||||| |||||||| | ||| | || |||||
Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGTTTTAAG 387639
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| |||| ||||| | || ||| | |||||||||||
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || ||| | || || ||||||| || |||||||| || || || ||||||
Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | || | | ||| ||||| || ||||| | | | | ||||||||||
Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387
||||| |||||||| || | |||||||| |||
Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTA 388100
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| || || ||||| | || ||| | ||||| |||||
Sbjct 388540 ATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATCA 388481
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || |||||| | || || ||||||| || ||||| || || || || ||||||
Sbjct 388480 GACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 388421
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||| | |||| | || |||||||| ||||||| | | | | | |||||||||
Sbjct 388420 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAAT 388361
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || || ||||| || | ||||| || | ||| || | || ||
Sbjct 388360 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGG 388314
>seq2987
Length=818656
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || |||||| | || || ||| | ||||| ||||||||||||| |
Sbjct 733570 ATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTCC 733629
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | |||||| ||||| || ||||| ||||| || || ||||||
Sbjct 733630 GACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733689
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | || |||| || |||||||||||| ||||||| |||| | | || || ||
Sbjct 733690 CAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAAC 733749
Query 25355 ATTCAAAAAGAATCCAC 25371
|||||||| ||||||||
Sbjct 733750 ATTCAAAAGGAATCCAC 733766
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | |||||||| || | || || || | |||||| |||||||||||||
Sbjct 733342 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTCT 733401
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | |||||| ||||| || ||||| ||||| || || ||||||
Sbjct 733402 GACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733461
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | || |||| || |||||||||||| ||||||| |||| | | || || ||
Sbjct 733462 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAAC 733521
Query 25355 ATTCAAAAAGAATCCACCATTCA 25377
|||||||| |||||||| ||||
Sbjct 733522 ATTCAAAAGGAATCCACACTTCA 733544
Score = 93.3 bits (102), Expect = 4e-14
Identities = 177/260 (68%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 25146 ATTATATAAGTAGTTTTCAATTAAA--CAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203
|||||| || ||||| ||| | || ||||||| | ||||| || || | || ||
Sbjct 733083 ATTATAAAATATTTTTTCTTTTAGATTCATCATGCAAATCTTTGTGAAGACCCTCACTGG 733142
Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263
|||| | ||||| | || || ||||| || ||||| || | || ||| || ||
Sbjct 733143 AAAAACTATCACCCTTGAGGTGGAAGCTTCTGACACTATAGAAAATGTCAAAGCCAAGAT 733202
Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323
||||||||||| || || || |||||||| | || || | || || |||||| |
Sbjct 733203 CCAAGATAAAGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCTGGTAAACAATT 733262
Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383
||||| | |||| | | ||||| || || ||||| |||||||| | ||||| ||
Sbjct 733263 GGAAGACGGCAGAACTCTTTCAGATTATAACATCCAAAAGGAATCCACACTCCATTTGGT 733322
Query 25384 GTTAAGATTGAGAGGAGGAA 25403
|| | | |||||||||
Sbjct 733323 TTTGCGTCTTCGAGGAGGAA 733342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445077542049600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |