Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3008 111 1e-19 seq2987 86.0 6e-12 >seq3008 Length=1134530 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | || | |||||||| || ||| ||||| || ||||||||||||| Sbjct 388540 TTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGG 388599 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || || ||||| || || ||||| ||||| |||||||| || | | Sbjct 388600 ACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTG 388659 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||| || | | ||| ||| || || | | | | | || || | ||| Sbjct 388660 GAATACCCTCTTTAT-CTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCA 388718 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 || || | || || ||||| || ||||| || |||||||| ||||||||| ||| Sbjct 388719 ACTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATTGTGT 388773 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| |||||||| | || || ||||||||||||||||||| Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || || || || || ||||| ||||| |||||||| |||| ||| Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| || || | | | | | || || | || || Sbjct 387519 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAAC 387577 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | |||||| ||||| || || | |||||| || || |||||||||| Sbjct 387578 TTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATTC 387627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| || ||||| | || || |||||||| |||||||| | Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || || || || || ||||| ||||| ||||| || |||| ||| Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| |||||| | ||| | | ||||| | || || Sbjct 387978 ATTCCTTCCTTGTCC-TGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGAC 388036 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | |||||||||||| || ||||| Sbjct 388037 TTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 >seq2987 Length=818656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||| || || | | |||| | || ||||| || || || || || Sbjct 733532 TCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAA 733473 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| |||||||| || | ||||| | || |||||| ||| ||| || || | | | Sbjct 733472 ATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGAT-TTTGGCTTTTACATT 733414 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | ||| || || | |||||| || || ||||| | ||| || || Sbjct 733413 TTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTAC 733354 Query 35725 AAATATCTGCATTC 35738 ||| || ||||||| Sbjct 733353 AAAGATTTGCATTC 733340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | ||| |||||||||||||| || || | | |||| | || Sbjct 733782 CAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATC 733723 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||| || || || || || |||| || ||||| || | ||||| | || ||||| Sbjct 733722 TTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTC 733663 Query 35644 CATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||| ||| || || | || | | ||||||| | ||| || || | ||||| | Sbjct 733662 CTGGAT-TTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGG 733604 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| || || | |||||||| || |||||||||| Sbjct 733603 TTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATTC 733568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776526192400