Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2987 149 6e-31 seq3008 143 3e-29 seq3007 100 3e-16 seq2856 91.5 1e-13 >seq2987 Length=818656 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 ||||| | |||||||| || | ||| ||||||||||||||||||||||| |||| || Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | || | || || || |||||||| || ||||||| ||| |||||||| || || Sbjct 733736 AGAGTTCTGCCA-TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGG 733678 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || || ||||| ||| || || | |||||||| | ||| || Sbjct 733677 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGAC 733618 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || |||||||| || || | ||||| ||||| || |||||| Sbjct 733617 TTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || ||||| || |||||||||||||||||||| ||||| Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG 733511 Query 134545 CAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || || | || || || |||||||| || ||||||| |||||||||||| || Sbjct 733510 AAAGAGTTCTGCCA-TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGA 733452 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| || || ||||| ||| || || | ||||| || | ||| Sbjct 733451 GGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCG 733392 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || || | ||| || || || ||||||||| Sbjct 733391 ACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || ||||| || | || || |||||||||||||| ||||| || || Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || ||| || | ||||| || || || |||| |||||||||||| || | Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| ||||| ||||| || || |||||| || | ||||| || | ||||| Sbjct 733222 GAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCA 733163 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || ||||| || || | || || || || |||||||| Sbjct 733162 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 >seq3008 Length=1134530 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || || || | || || || ||||| || ||||| ||||| ||| | Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || |||||||| || ||||| ||||||||||||||||| || || Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| |||||||||||| || || || | ||| || || | ||| || Sbjct 388206 ATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACT 388265 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||| || || |||| |||||| |||||||| ||||| Sbjct 388266 TCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||| |||||||||||||| ||| | || || || || || ||| Sbjct 387423 TGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCAAGTTGT 387482 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||||||||| || || || |||||||| ||||||||||| Sbjct 387483 TTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGAATTTTA 387542 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | || || || | || || || | || |||||||| || ||| Sbjct 387543 GCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTTCCCTGTT 387602 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | |||||| |||||||| |||||| Sbjct 387603 AGAGTTTTGACGAAAATCTGCATT 387626 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 |||||||||||||| || || || || | ||| ||| | ||| || || || || || Sbjct 387657 GTGGATTCCTTTTGGATATTATAATCAGACAA-AGTGCGCCCGTCTTCCAGTTGCTTTCC 387715 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||||||||||||||||||||| || || || || ||||| |||||||| || ||| Sbjct 387716 AGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGAATCTTGGCTTT 387775 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | || || || || || || || || || |||||||||||||| | ||| Sbjct 387776 TACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTACCGGTAAGAGT 387835 Query 134696 TTTAACGAAAATTTGCAT 134713 |||||||||||| ||||| Sbjct 387836 TTTAACGAAAATCTGCAT 387853 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||| || |||||||| ||| | ||| || || || |||||||| || Sbjct 388572 GTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCAAGCTGTTTTCCG 388631 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 |||||||||||||||||||||||||| || || || ||||| ||||||||||| ||| Sbjct 388632 GCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGAATTTTGGCTTTT 388691 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | || || || | ||| || || ||||| || ||||| || || || || Sbjct 388692 ACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTTCCCAGTCAATGTC 388751 Query 134697 TTAACGAAAATTTGCATTTTGTT 134719 || || || || |||||| |||| Sbjct 388752 TTCACAAAGATCTGCATTGTGTT 388774 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || |||||||| || || ||||| || | ||| | || || || || || ||||| || Sbjct 388344 GTAGATTCCTTCTGGATATTGTAATCAGACAAAG-TGCGACCATCTTCAAGTTGTTTTCC 388402 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||||||||| | ||||||||| || || ||||||||||| |||||||||||| || Sbjct 388403 AGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGAATTTTTGCCTT 388462 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | |||||| || | ||| || || | || ||||| || || || || || Sbjct 388463 AACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTTCCTGTCAAGGT 388522 Query 134696 TTTAACGAAAATTTGCATT 134714 |||||||||||| |||||| Sbjct 388523 TTTAACGAAAATCTGCATT 388541 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||| |||||||| ||||| || | || || || ||||| ||| Sbjct 387882 TGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCGAGTTGT 387941 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||| ||||| || || || ||||| || || ||||||||| Sbjct 387942 TTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTGAATTTTT 388001 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | |||||| || | || || || | ||| |||||||| || || Sbjct 388002 GCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTTTCCTGTA 388061 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||| || ||||||||||| Sbjct 388062 AGAGTTTTCACAAAAATTTGCAT 388084 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| || || || || |||||||||||||| |||||||| Sbjct 387168 TTTCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCT 387227 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || ||||| || |||||||||||||||| | || ||||| || Sbjct 387228 GATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGA 387287 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| ||||| |||||||| ||| || || || | || || || | || Sbjct 387288 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCG 387347 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || || || ||||||||||| |||||||| ||||| Sbjct 387348 ACTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 >seq3007 Length=2871884 Score = 100 bits (110), Expect = 3e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 ||||| || |||||||| |||| ||| || ||||||| ||||| | | |||||| || Sbjct 1591450 CAATATGATATGTGGAACGTCAAGCCGACAGATTTGTGGGATTGGGACAAGTTGAAA-GC 1591508 Query 8821 AAA-ATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCAC 8879 | | || || | || || | |||||||| || | || ||||| || || | Sbjct 1591509 AGAGATCGCAGAGCATGGAGTGAGAAATTCGCTTTTAATAGCACCTATGCCGACGGCTTC 1591568 Query 8880 GACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGT 8939 || || || || | ||||||||||||||| | ||| | | ||| | ||| | ||||| Sbjct 1591569 CACGGCGCAGATTCTCGGAAACAACGAATCCATCGAGGCATACACGAGCAATATTTACGT 1591628 Query 8940 GAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGAT 8999 |||||| || ||| |||| || || | || | |||| ||| || |||| ||||||| Sbjct 1591629 GAGACGCGTATTGTCCGGGGAATTCATCATCGTTAATCCGCATCTGTTGCGAGACTTGAC 1591688 Query 9000 CG 9001 || Sbjct 1591689 CG 1591690 >seq2856 Length=4748033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || || | ||||||||||| || || || || ||||| Sbjct 1621028 TCTTCCAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTA 1620969 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||| || || | || || |||||||| || ||||| ||||| Sbjct 1620968 TCCTGTATCTTGGCTTTTACATTTTCTATAGTATCCGACGATTCTACCTCGAGGGTAATA 1620909 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || | ||||| |||||||| ||||| Sbjct 1620908 GTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 1620874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505379258035600