Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 118 1e-21
seq3007 96.9 5e-15
seq2783 96.9 5e-15
>seq2581
Length=3237177
Score = 118 bits (130), Expect = 1e-21
Identities = 162/223 (73%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 39421 ttttttAAATCCTAATTCTGA--AATCAATCTATCTGCAACAAATTCTATGTATGTTTTC 39478
||||| ||||||||| | || ||| |||||||| || |||||||| ||||| || |
Sbjct 741394 TTTTTCAAATCCTAACGC-GACGAAT-AATCTATCCGCGACAAATTCGATGTAGGTGCAC 741337
Query 39479 ATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTT 39538
|| | | ||||||||||||||| | || ||||||| || | ||||| || ||||||
Sbjct 741336 ATGAGTGTACAATTCATTCCTATCATTTCGACTGGTAATGCTTGCGTTAAGAATTCTTTT 741277
Query 39539 TCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT 39598
|| || || || || || |||| |||| | | || |||| || ||||
Sbjct 741276 TCAATTTCCACAGCATCCATTATGATCGTTTTCACGCGCTCAAACGAAGGCTTTTGCACG 741217
Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641
| |||||||||||||||||| || || |||||||||| ||||
Sbjct 741216 ATATGTTTAAACATTAAGCACGCAAAATCACAATGTAATCCCT 741174
Score = 113 bits (124), Expect = 6e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966
||||||||||||||| || ||||| || || || || || || |||||||| | ||||||
Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576
Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026
| |||| ||| ||| || |||||||| || |||||||| || |||||||||
Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516
Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 40071
||| ||||| || ||||| ||||| ||||| ||| | || ||
Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471
>seq3007
Length=2871884
Score = 96.9 bits (106), Expect = 5e-15
Identities = 126/172 (73%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| ||| |||||||||| || |||||| | | ||||| ||||||||| ||
Sbjct 1592012 TCCAACCGAAGAAATGCATCGACGTAAGTTTGTCACGTGTCGGATCATCTATATGAACAT 1591953
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTC 68559
||| ||||| |||||||||||||| |||| ||| |||||||||| | || ||||
Sbjct 1591952 TCAGGGATTGCGACTGATCGATGAAAGCCCCTCGATCGGCCGCCATTTCGAGAATTACT- 1591894
Query 68560 TTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
|| || || || ||||| | ||| ||| | | | ||| | |||||| ||||
Sbjct 1591893 TTCTGCGGTATCTCCCATACAGTTTTATAGAGCATTTTCAAATCATCGGGAA 1591842
Score = 89.7 bits (98), Expect = 7e-13
Identities = 90/116 (78%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|||| ||| |||||||||||| | || || ||| |||||| ||||||||||| ||||
Sbjct 1590557 AATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAGGACACATCAAGCTCCAC 1590498
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
| ||||||| | || |||| |||||| ||||| || ||||| ||| | |||||
Sbjct 1590497 ATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCCACAGA-CCATAAA 1590443
>seq2783
Length=2925630
Score = 96.9 bits (106), Expect = 5e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011
|| ||||||||| |||| |||| | ||||| | || |||| || ||||| |||||
Sbjct 53119 ATGATATGTTTCGTAAGTGCCTTTTTTCTCAGCCAACTCGAAACTGGCTTCTAAGGCACC 53178
Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071
| |||| || ||||| || || | ||||| || | |||||| |||||||| ||
Sbjct 53179 AAAGTAAAGCGTCTCGAAGATTTTGATGTTGAGCTCCTTCGCTTCTTTGCTATCGAACGG 53238
Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119
||| | | | ||||| ||||||||||| ||||| || ||||||||
Sbjct 53239 ATATCGCATTAACATAAACGCATCTGCCAAACCCTGCACTCCAATACC 53286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686882783329200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |