Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2581 118 1e-21 seq3007 96.9 5e-15 seq2783 96.9 5e-15 >seq2581 Length=3237177 Score = 118 bits (130), Expect = 1e-21 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 39421 ttttttAAATCCTAATTCTGA--AATCAATCTATCTGCAACAAATTCTATGTATGTTTTC 39478 ||||| ||||||||| | || ||| |||||||| || |||||||| ||||| || | Sbjct 741394 TTTTTCAAATCCTAACGC-GACGAAT-AATCTATCCGCGACAAATTCGATGTAGGTGCAC 741337 Query 39479 ATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTT 39538 || | | ||||||||||||||| | || ||||||| || | ||||| || |||||| Sbjct 741336 ATGAGTGTACAATTCATTCCTATCATTTCGACTGGTAATGCTTGCGTTAAGAATTCTTTT 741277 Query 39539 TCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT 39598 || || || || || || |||| |||| | | || |||| || |||| Sbjct 741276 TCAATTTCCACAGCATCCATTATGATCGTTTTCACGCGCTCAAACGAAGGCTTTTGCACG 741217 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||||||||||||||| || || |||||||||| |||| Sbjct 741216 ATATGTTTAAACATTAAGCACGCAAAATCACAATGTAATCCCT 741174 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||||||||||||| || ||||| || || || || || || |||||||| | |||||| Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | |||| ||| ||| || |||||||| || |||||||| || ||||||||| Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 40071 ||| ||||| || ||||| ||||| ||||| ||| | || || Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471 >seq3007 Length=2871884 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||||||||| || |||||| | | ||||| ||||||||| || Sbjct 1592012 TCCAACCGAAGAAATGCATCGACGTAAGTTTGTCACGTGTCGGATCATCTATATGAACAT 1591953 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTC 68559 ||| ||||| |||||||||||||| |||| ||| |||||||||| | || |||| Sbjct 1591952 TCAGGGATTGCGACTGATCGATGAAAGCCCCTCGATCGGCCGCCATTTCGAGAATTACT- 1591894 Query 68560 TTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 || || || || ||||| | ||| ||| | | | ||| | |||||| |||| Sbjct 1591893 TTCTGCGGTATCTCCCATACAGTTTTATAGAGCATTTTCAAATCATCGGGAA 1591842 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 |||| ||| |||||||||||| | || || ||| |||||| ||||||||||| |||| Sbjct 1590557 AATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAGGACACATCAAGCTCCAC 1590498 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 | ||||||| | || |||| |||||| ||||| || ||||| ||| | ||||| Sbjct 1590497 ATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCCACAGA-CCATAAA 1590443 >seq2783 Length=2925630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 || ||||||||| |||| |||| | ||||| | || |||| || ||||| ||||| Sbjct 53119 ATGATATGTTTCGTAAGTGCCTTTTTTCTCAGCCAACTCGAAACTGGCTTCTAAGGCACC 53178 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 | |||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 53179 AAAGTAAAGCGTCTCGAAGATTTTGATGTTGAGCTCCTTCGCTTCTTTGCTATCGAACGG 53238 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 ||| | | | ||||| ||||||||||| ||||| || |||||||| Sbjct 53239 ATATCGCATTAACATAAACGCATCTGCCAAACCCTGCACTCCAATACC 53286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882783329200