Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2581 120 2e-22 seq2907 105 5e-18 >seq2581 Length=3237177 Score = 120 bits (132), Expect = 2e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 43838 TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTG 43897 ||||| ||| ||||||||||| |||||||| || || || || |||||||| || Sbjct 740483 TTTATCTCTCATGTTTTGGCGTTCTTTGCTGCTTCTGATGGAATTGTTAATGAAAACTTA 740542 Query 43898 GTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 || | || |||||||| || | |||||||||| ||||||||||| || ||| Sbjct 740543 ATTGAAAGATTCAGTCAAGAAGTAAAAATCGCAGAAGCACGCTGTTTTTATGGTTTCCAA 740602 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 || |||||||||||||||||||| |||||||| || || || || || ||||| Sbjct 740603 ATCGCCATAGAAAATATTCATTCAGAAATGTATTCACTACTCATTGAAACTTACAT 740658 >seq2907 Length=4756786 Score = 105 bits (116), Expect = 5e-18 Identities = 201/292 (69%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || || ||| ||||| | || ||||| ||||| |||| || ||||| Sbjct 3020390 AATTGGTGGCTTAGATAAGGAGTTCAGCGCCATTTTTCGAAGAGCGTTTGCATCCCGTGT 3020449 Query 19302 TTTTTCTGCAGA---TGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCT 19358 |||| | | || ||||| | |||||||| || || || || ||| | ||||| Sbjct 3020450 TTTTCCGACCGAGATTGTCACT---CAATTGGGTTGCAAGCACGTAAAAGGAATCTTGCT 3020506 Query 19359 TTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAA-AT--TACT 19415 |||||||| || ||| |||||||||||||| || | || | | || || || Sbjct 3020507 ATATGGGCCGCCTGGTACAGGAAAAACATTAATGGCTCGTCAAATAGGAAACATGCTAAA 3020566 Query 19416 TACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCA 19475 | ||| || |||||||||||||||||||| |||| || |||||||||| || | Sbjct 3020567 TGCAAGGGAA---CCCAAAATTGTAAATGGTCCACAAATTTTGGATAAATATGTGGGAGA 3020623 Query 19476 ATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 |||| ||| | | | ||||||||||| || ||||| ||| | ||| Sbjct 3020624 GAGTGAAGCTAATATTAGGAGATTGTTTGCTGATGCGGAAGACGAAGAGAAA 3020675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441322695150