Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq2981 100 2e-16 >seq2981 Length=868677 Score = 100 bits (110), Expect = 2e-16 Identities = 185/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 112027 ATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTTGCCCCATAGTGTCTCCA 112085 || |||| | ||||||||| | || | |||| | || | || ||| |||||||||| Sbjct 860341 ATACCTTGTCTAGTATAATCTGTGTGCATATCCTGA-TACTTGGCACCAAAGTGTCTCCA 860399 Query 112086 TTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTATT 112145 ||| |||||||||| ||| || | ||| || || |||| | || | | | | Sbjct 860400 TTGAAATCCATAAACAGGTCCTAAATCACCTTCCTCTCTATCAGTGAAGC-CACAAGAGT 860458 Query 112146 C-AACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTC 112204 | || ||| | | | | || || ||| || | || |||||| || ||| ||| Sbjct 860459 CTAAAAAAGCCCGTGAACCATTTCCATCCCAGATATGAACACCTTTATCTGCTAATTCTT 860518 Query 112205 TTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACA 112264 | | |||||| ||||||||||||||||||| |||||||| || || || |||| ||| Sbjct 860519 TGGAATTTGTCGATCCTCTAATAAACCATAATAATTCTTCAACTACTGCTCGCCAGAACA 860578 Query 112265 CTCTTTTAGTAGTTAGCAGTGGAAAA 112290 |||||||||| || || | ||| ||| Sbjct 860579 CTCTTTTAGTGGTCAGTAATGGGAAA 860604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391931126183890