Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3008 158 1e-33 seq2987 152 4e-32 seq2838 93.3 4e-14 >seq3008 Length=1134530 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || |||| ||||||||||| ||| | || Sbjct 388768 ATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTCT 388709 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||| ||||| || || ||||||||||| Sbjct 388708 GATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCAG 388649 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| ||||| | ||||| || || | |||||||||||| Sbjct 388648 CAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAAC 388589 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || || ||||||||| | | |||| ||||| || Sbjct 388588 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGTGGTGGAAT 388539 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || || | || || | ||||| || | || Sbjct 387625 ATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCA 387566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| |||||| |||||||||||||||||||| || || || ||||| Sbjct 387565 GATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 387506 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||||| || | || || |||||| | ||||| || ||| || | ||||||||||| Sbjct 387505 CAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGT-CGAACGCTCTCCGATTACAA 387447 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || || | |||||||||||| | | || ||||| || Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 387396 Score = 145 bits (160), Expect = 7e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || ||| | ||||| | ||||| ||| | || Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || |||||||||||||||||| ||||| || || ||||| Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| ||||| | |||||| | || ||||||||||||| Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| || || || || | ||||| ||||| || Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTACG 388098 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | || ||| | ||||| || | || Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||||||||| ||||| ||||| || || || |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 |||||||| || | ||||| |||||| | ||||| | |||| || | || |||||||| Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGA-TGGTCGAACGCTCTCAGATTACAA 387906 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | ||||| |||||| | | || ||||| Sbjct 387905 TATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCTTCGCGGTGG 387858 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || || | ||||| ||| | || Sbjct 388540 ATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATCA 388481 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || |||||||||||||||||||||||| || || ||||| Sbjct 388480 GACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 388421 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | ||||| || || | || |||||||| Sbjct 388420 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAAT 388361 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || || ||||||||| | | |||| ||||| || Sbjct 388360 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGGTAT 388311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | || || ||| | ||||| | ||||| || | || Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| |||||||| ||||| ||||| || || |||||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| | || || | || | || || ||||| Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | ||| | || | ||| | ||||| || Sbjct 387217 ATTCAAAAGGAATCTACACTTCATCTTGTGCTTCGTCTTCGGGGCGG 387171 >seq2987 Length=818656 Score = 152 bits (168), Expect = 4e-32 Identities = 185/251 (74%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 26969 ATTTTTTAATTTATACGC--CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATT 27026 ||||||| |||| | | |||||| || ||||| || || || || || || |||| Sbjct 733093 ATTTTTTCTTTTAGATTCATCATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATC 733152 Query 27027 ACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAA 27086 || ||||| |||||| | || ||| | || || | |||||| || || ||||| ||| Sbjct 733153 ACCCTTGAGGTGGAAGCTTCTGACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAA 733212 Query 27087 GAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 || ||||| || || ||||| |||||| | || | ||| || ||||||||||||||| | Sbjct 733213 GAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGC 733272 Query 27147 TCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTG 27206 || |||| ||||| ||||| |||||||| || || | ||||||||||||||| | Sbjct 733273 AGAACTCTTTCAGATTATAACATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTT 733332 Query 27207 CGGGGTGGCAT 27217 || || || || Sbjct 733333 CGAGGAGGAAT 733343 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || ||||| | || || || ||||| ||| | ||| Sbjct 733570 ATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTCC 733629 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| ||||| || ||||||||||| || || || ||||| Sbjct 733630 GACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733689 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||||||| ||||||| | || |||| || || ||| Sbjct 733690 CAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAAC 733749 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | || ||||||||||| | ||||| || Sbjct 733750 ATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGG 733796 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| ||||| || |||||| | || || || ||||| ||| | || Sbjct 733342 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTCT 733401 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| ||||| || ||||||||||| || || || ||||| Sbjct 733402 GACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733461 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||| ||||||| | || |||| || || ||| Sbjct 733462 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAAC 733521 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || |||| ||||| | || || || || Sbjct 733522 ATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAAT 733571 >seq2838 Length=268038 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| ||||| || || | || ||||||||||| ||||| || Sbjct 121969 AGGAATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAG 122028 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | |||||||| || || |||||||| || || ||||| || || ||||| ||||| Sbjct 122029 GACTTTGTCCGATTATAATATACAAAAGGAATCTACGTTACACTTAGTGTTGCGCTTGCG 122088 Query 27209 GGGTGG 27214 || || Sbjct 122089 AGGAGG 122094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434901927465600