Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3008 113 3e-20 seq2987 91.5 1e-13 >seq3008 Length=1134530 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| || | ||||||||| ||| || |||| || ||| | Sbjct 388769 AATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTC 388710 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||| ||| |||| || Sbjct 388709 TGATACTATTGAGAAT--GTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGAT 388652 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||||||||||||||| | || || | |||| |||||||||||| Sbjct 388651 CAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTAC 388592 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || ||||||||||||||| | | ||||||| || Sbjct 388591 AACATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGTGGTGG 388542 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| ||||| || |||||||| || |||||| || || | || || || | | Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| |||||| ||||| ||||||||||| | || ||| Sbjct 387566 AGATACTATCGAGAAT--GTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGAT 387509 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA----CGAACGCAGCTTGTCCGA 27962 ||||| || || || ||||| ||||||||| | || || ||||||| | ||||| Sbjct 387508 CAGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGC----TCTCCGA 387453 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||||||| |||||||| |||| |||||||||||||| Sbjct 387452 TTACAACATTCAAAAAGAATCCACTCTGCATTTGGTTTTG 387413 Score = 100 bits (110), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 20/223 (9%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||||||||| || ||| || || | || ||||| ||| | Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAG-GCATC 388026 Query 27850 -GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||||| ||||| |||||| ||||| ||||| | || | Sbjct 388025 AGAC-----ACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCG 387971 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA----CGAACGCAGCTTGTC 27959 || || || || || || ||||||||||||||| | || || ||||||| | || Sbjct 387970 GATCAACAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGC----TCTC 387915 Query 27960 CGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||||| || |||||||| |||| | ||||| |||||| Sbjct 387914 AGATTACAATATTCAAAAAGAATCCACTCTTCATTTAGTTTTG 387872 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| || || || ||||| | || |||||| ||| | Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAA-GCATC 388254 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | || || |||||| |||||||| || | || || Sbjct 388253 A--GAT--ACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGG 388198 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || |||||||||||||| | || |||| |||| | ||||||| Sbjct 388197 ATCAGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATT 388138 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||| || || ||||| ||| ||||||| ||||| || Sbjct 388137 ACAATATTCAGAAAGAATCTACTCTGCATTTAGTTTTACG 388098 Score = 86.0 bits (94), Expect = 4e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || ||| ||||| | || |||||||| ||||||||| | || Sbjct 388447 GACAAAGAAGGCATCCCTCCGGATCAGCAGAGATTGATTTTTGCTGGAAAACAACTTGAA 388388 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || | |||| ||||| |||||||| ||||| || || ||||||||||||||| Sbjct 388387 GATGGTCGCACTTTGTCTGATTACAATATCCAGAAGGAATCTACTTTGCATTTGGTT 388331 >seq2987 Length=818656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || || ||||| ||| ||| || |||| || ||| | Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || |||||| || || || ||||| || |||| || ||| Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTAC 27966 || || | || || || || ||||||||||| |||| |||| || | || ||||| Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACG---GCAGAACTCTTTCAGATTAT 733290 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| | ||||||||||||||| | || || || Sbjct 733291 AACATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGG 733340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || |||||||| || || || ||| || ||| | || |||||| | Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | || || ||| ||||| |||||||||||| |||| || Sbjct 733629 CGACACGATCGAAAAC--GTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGAT 733686 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGAT 27963 |||||||| | ||||| ||||| |||||| |||| || | |||| || | || || Sbjct 733687 CAGCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATG---GCAGAACTCTTTCGGAC 733743 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || ||||| ||||| || ||| | || ||||||||||| Sbjct 733744 TATAACATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCG 733784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849258668810