Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 194 4e-44
seq2856 167 5e-36
seq3008 138 3e-27
seq2838 86.0 1e-11
>seq2987
Length=818656
Score = 194 bits (214), Expect = 4e-44
Identities = 176/222 (79%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || |||||||| ||||| || ||||| |||||||| || | ||| ||
Sbjct 733562 CGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTT 733503
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|| ||||||||||| || ||||| ||||| || || || || || |||||||||| |||
Sbjct 733502 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCT 733443
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| ||||||||||| || ||| || |||||||| |||||||| ||| || |||||
Sbjct 733442 TCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGC 733383
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct 733382 GTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| | || | ||| || ||||| || ||||| |||||||| |||| ||| ||
Sbjct 733790 CGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTT 733731
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|| ||||||||||| || ||||| ||||| || || ||||| || |||||||||| |||
Sbjct 733730 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCT 733671
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| ||||||||||| || ||| ||||||||||| ||||| || ||| || |||||
Sbjct 733670 TCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGT 733611
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || || || ||||| || || || || | |||||||
Sbjct 733610 GTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || ||||| || ||||||||||||||||| | ||| || || || ||||||| ||
Sbjct 733316 TGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGT 733257
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || |||||||| || || || || |||||||||| || || || || ||||||||
Sbjct 733256 TTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTG 733197
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || ||||| || |||||||| ||| ||||| || ||||| || ||||| |||
Sbjct 733196 GCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTG 733137
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| | |||||
Sbjct 733136 AGGGTCTTCACAAAGATTTGCAT 733114
>seq2856
Length=4748033
Score = 167 bits (184), Expect = 5e-36
Identities = 151/190 (79%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
|||||||||| |||||||| | ||| || | ||||||||||||||||||||| |||||||
Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
|||| || || || ||||| |||| ||| || || ||||| ||||| ||| || ||||
Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
| || || || || ||| |||||||| || || ||||| |||||||| || ||||| |
Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884
Query 211105 ACACCTGCAT 211114
| | ||||||
Sbjct 1620883 AAATCTGCAT 1620874
>seq3008
Length=1134530
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| || | || | ||||||||||| |||||||| || || ||||| | || ||
Sbjct 387864 CGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTT 387923
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||||| || || || || || ||||| | || ||||| || ||||| | ||||
Sbjct 387924 CGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCT 387983
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| || ||| || ||||| ||||| ||||| || || || || | |
Sbjct 387984 TCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAA 388043
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||| || ||||| || ||||| | |||||
Sbjct 388044 GTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || ||||| ||||| || || || ||||| || || || || | | ||
Sbjct 387177 CGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTG 387236
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||| || || ||||||||||| || || || | |||||| |||||||||| ||
Sbjct 387237 CGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCC 387296
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| || || || |||||| |||||||| || ||||| ||||| || || || |
Sbjct 387297 TCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAAT 387356
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| || | ||| || || || | ||||||
Sbjct 387357 GTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
>seq2838
Length=268038
Score = 86.0 bits (94), Expect = 1e-11
Identities = 115/160 (72%), Gaps = 9/160 (6%)
Strand=Plus/Minus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
||||| || || || || ||| ||||| |||||||| || ||||| |||||||||
Sbjct 121613 CCTTCTTTATCTTGAATTTTTGCCTTCACATTTTCGATCGTATCAGACGCCTCAACCTCG 121554
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGAT 211130
|| ||||| || || ||||| ||||| || ||||| | |||| ||| ||| ||
Sbjct 121553 AGGGTGATGGTTTTCCCCGTAAGAGTTTTCACAAAGATCTGC-----ATGATTA----AT 121503
Query 211131 GCTTCTTTTAAAATATTTTTGTTTTATTTGCTCATGAAAT 211170
| |||| | | | ||| ||| ||| ||| | |||| ||||
Sbjct 121502 GATTCTGTAACATTATGTTTCTTTGATTAGTTCATTAAAT 121463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159106999545950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |