Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2987 194 4e-44 seq2856 167 5e-36 seq3008 138 3e-27 seq2838 86.0 1e-11 >seq2987 Length=818656 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| ||||| || ||||| |||||||| || | ||| || Sbjct 733562 CGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTT 733503 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| || ||||| ||||| || || || || || |||||||||| ||| Sbjct 733502 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCT 733443 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||| || |||||||| |||||||| ||| || ||||| Sbjct 733442 TCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGC 733383 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| |||||||||||||| | |||||| Sbjct 733382 GTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || | ||| || ||||| || ||||| |||||||| |||| ||| || Sbjct 733790 CGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTT 733731 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| || ||||| ||||| || || ||||| || |||||||||| ||| Sbjct 733730 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCT 733671 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||| ||||||||||| ||||| || ||| || ||||| Sbjct 733670 TCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGT 733611 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || ||||| || || || || | ||||||| Sbjct 733610 GTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || ||||||||||||||||| | ||| || || || ||||||| || Sbjct 733316 TGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGT 733257 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || || || || |||||||||| || || || || |||||||| Sbjct 733256 TTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTG 733197 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || |||||||| ||| ||||| || ||||| || ||||| ||| Sbjct 733196 GCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTG 733137 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 733136 AGGGTCTTCACAAAGATTTGCAT 733114 >seq2856 Length=4748033 Score = 167 bits (184), Expect = 5e-36 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||||||||| |||||||| | ||| || | ||||||||||||||||||||| ||||||| Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| || || || ||||| |||| ||| || || ||||| ||||| ||| || |||| Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || ||| |||||||| || || ||||| |||||||| || ||||| | Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 1620883 AAATCTGCAT 1620874 >seq3008 Length=1134530 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| || | || | ||||||||||| |||||||| || || ||||| | || || Sbjct 387864 CGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTT 387923 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || || || || || ||||| | || ||||| || ||||| | |||| Sbjct 387924 CGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCT 387983 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| || ||| || ||||| ||||| ||||| || || || || | | Sbjct 387984 TCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAA 388043 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || ||||| || ||||| | ||||| Sbjct 388044 GTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||||| ||||| || || || ||||| || || || || | | || Sbjct 387177 CGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTG 387236 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || || ||||||||||| || || || | |||||| |||||||||| || Sbjct 387237 CGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCC 387296 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || |||||| |||||||| || ||||| ||||| || || || | Sbjct 387297 TCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAAT 387356 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || | ||| || || || | |||||| Sbjct 387357 GTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 >seq2838 Length=268038 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 9/160 (6%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| || || || || ||| ||||| |||||||| || ||||| ||||||||| Sbjct 121613 CCTTCTTTATCTTGAATTTTTGCCTTCACATTTTCGATCGTATCAGACGCCTCAACCTCG 121554 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGAT 211130 || ||||| || || ||||| ||||| || ||||| | |||| ||| ||| || Sbjct 121553 AGGGTGATGGTTTTCCCCGTAAGAGTTTTCACAAAGATCTGC-----ATGATTA----AT 121503 Query 211131 GCTTCTTTTAAAATATTTTTGTTTTATTTGCTCATGAAAT 211170 | |||| | | | ||| ||| ||| ||| | |||| |||| Sbjct 121502 GATTCTGTAACATTATGTTTCTTTGATTAGTTCATTAAAT 121463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159106999545950