Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3007 138 2e-27 seq2581 111 2e-19 seq2783 96.9 5e-15 >seq3007 Length=2871884 Score = 138 bits (152), Expect = 2e-27 Identities = 197/275 (72%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 ||| || || ||||| || |||| || | || |||||||| ||||| || ||||| Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 78431 CGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 |||||| || ||| || || ||| || |||||||| |||||| || ||||| || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||||| || || || || | ||||||||| || || |||||||| || || | || Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | |||||||| | || |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 |||| || || || ||| |||| | ||||| ||| Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTCT 1589688 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 ||||| |||||||| || ||||| || |||||||| | | ||||||||| || Sbjct 1591673 AGATGCGGATTAACGATGATGAATTCCCCGGACAATACGCGTCTCACGTAAATATTGCTC 1591614 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || |||| || | ||||| |||||||| | ||| || || || ||||| || |||||| Sbjct 1591613 GTGTATGCCTCGATGGATTCGTTGTTTCCGAGAATCTGCGCCGTGGAAGCCGTCGGCATA 1591554 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 77288 ||||| | || | |||||| | ||||| | ||| | |||| | | | | Sbjct 1591553 GGTGCTATTAAAAGCGAATTTCTCACTCCATGCTCTGCGATCTCTGCTTTCAACTTGTCC 1591494 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 |||||||| | ||||| || || | ||| | ||| ||||| || || Sbjct 1591493 CAATCCCACAAATCTGTCGGCTTGACGTTCCACATATCATATTGGAGGAT 1591444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| ||| |||||||||| || |||||| | | ||||| ||||||||| || Sbjct 1592012 TCCAACCGAAGAAATGCATCGACGTAAGTTTGTCACGTGTCGGATCATCTATATGAACAT 1591953 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| || || |||||||||||||| |||| ||| |||||||||| | ||| | Sbjct 1591952 TCAGGGATTGCGACTGATCGATGAAAGCCCCTCGATCGGCCGCCATTTCGAGAATTACTT 1591893 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || || || ||||| | |||||| | | ||| | |||||| |||| Sbjct 1591892 TCTGCGGTATCTCCCATACAGTTTTATAGAGCATTTTCAAATCATCGGGAA 1591842 >seq2581 Length=3237177 Score = 111 bits (122), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 48407 AACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTG 48466 || |||||| || || | || ||||||||| || ||||||||||| || || || || Sbjct 740659 AATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATATTTTCTATGGCGATTTG 740600 Query 48467 AAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAA 48526 || || |||||||| | ||||||| ||| | ||| || || |||| |||| || Sbjct 740599 GAAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGACTGAATCTTTCAATTAA 740540 Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586 || ||||| || ||||||||| ||||||||| || || || ||||| ||||| || Sbjct 740539 GTTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTA 740480 Query 48587 TTTTTCGTTGGAAGTCAG--TTTATTCC 48612 | | |||| ||| | || ||| |||| Sbjct 740479 TCTCTCGTCAGAATTGAGCTTTTCTTCC 740452 >seq2783 Length=2925630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 77360 ATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCC 77419 || ||||||||| |||| |||| | | ||||| | || |||| ||||| || || || Sbjct 53119 ATGATATGTTTCGTAAGTGCCTTTTTTCTCAGCCAACTCGAAACTGGCTTCTAAGGCACC 53178 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 | |||| || ||||| || || | ||||| || | ||||| | ||||| ||||| Sbjct 53179 AAAGTAAAGCGTCTCGAAGATTTTGATGTTGAGCTCCTTCGCTTCTTTGCTATCGAACGG 53238 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 ||| | | | ||||| |||||||| || ||||| ||||||||||| Sbjct 53239 ATATCGCATTAACATAAACGCATCTGCCAAACCCTGCACTCCAATACC 53286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642489419200