Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 113 6e-20
seq3007 104 3e-17
seq2783 96.9 5e-15
>seq2581
Length=3237177
Score = 113 bits (124), Expect = 6e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979
|||||||||||||||||| ||||| || || || || || || |||||||| | ||||||
Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576
Query 46980 AGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACT 47039
| || | ||| ||| || |||| |||| || || ||||| || |||||||||
Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516
Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084
||||||||| || ||||| ||||| ||||| ||| | || ||
Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471
>seq3007
Length=2871884
Score = 104 bits (114), Expect = 3e-17
Identities = 189/274 (69%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025
||| || || ||||| || |||| || | || ||||| || || || || |||||
Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902
Query 77026 AGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084
|| || || ||| || || ||| || |||||||| ||| || || || || ||
Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843
Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144
|||||| || ||||| || | ||||||||| || || |||| ||| || || | ||
Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783
Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204
| |||||||| | || |||||| ||||||||||||| ||| || || ||||
Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723
Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238
|||| || || || ||| | || | ||||| ||
Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 75704 AGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTG 75763
||||| |||||||| || ||||| || |||||||| | || ||||||||| ||
Sbjct 1591673 AGATGCGGATTAACGATGATGAATTCCCCGGACAATACGCGTCTCACGTAAATATTGCTC 1591614
Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823
|| |||| || | ||||| |||||||| | ||| || || || ||||| |||||||||
Sbjct 1591613 GTGTATGCCTCGATGGATTCGTTGTTTCCGAGAATCTGCGCCGTGGAAGCCGTCGGCATA 1591554
Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 75883
||||| | || | |||||| | ||||| | ||| | |||| | | | |
Sbjct 1591553 GGTGCTATTAAAAGCGAATTTCTCACTCCATGCTCTGCGATCTCTGCTTTCAACTTGTCC 1591494
Query 75884 CAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
|||||||| | ||||| || || | ||| | ||| ||||| || ||
Sbjct 1591493 CAATCCCACAAATCTGTCGGCTTGACGTTCCACATATCATATTGGAGGAT 1591444
Score = 89.7 bits (98), Expect = 7e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567
||||| || || ||||| ||| |||||||||||| | || || ||| |||||| |||
Sbjct 1590572 GTATACAATTCTTTAAATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAGGA 1590513
Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627
|||||||| |||| |||| | | || |||| |||||| ||||| ||||||||
Sbjct 1590512 CACATCAAGCTCCACATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCCAC 1590453
Query 76628 AGAGCAATAAATAGATCTC 76646
||| || ||||| ||||
Sbjct 1590452 AGACCATAAAATAAGTCTC 1590434
Score = 87.8 bits (96), Expect = 3e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| ||| |||||||||| || |||||| | ||||||| ||||||||| ||
Sbjct 1592012 TCCAACCGAAGAAATGCATCGACGTAAGTTTGTCACGTGTCGGATCATCTATATGAACAT 1591953
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| || || |||||||||||||| |||| ||| |||||||||| | ||| |
Sbjct 1591952 TCAGGGATTGCGACTGATCGATGAAAGCCCCTCGATCGGCCGCCATTTCGAGAATTACTT 1591893
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| || || || ||||| | |||||| | | ||| | |||||| ||||
Sbjct 1591892 TCTGCGGTATCTCCCATACAGTTTTATAGAGCATTTTCAAATCATCGGGAA 1591842
>seq2783
Length=2925630
Score = 96.9 bits (106), Expect = 5e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014
|| ||||||||||||||| || | || ||||| | ||| |||| || ||||| |||||
Sbjct 53119 ATGATATGTTTCGTAAGTGCCTTTTTTCTCAGCCAACTCGAAACTGGCTTCTAAGGCACC 53178
Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074
| |||| || ||||| || || | || || || | |||||| ||||| || ||
Sbjct 53179 AAAGTAAAGCGTCTCGAAGATTTTGATGTTGAGCTCCTTCGCTTCTTTGCTATCGAACGG 53238
Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122
||| | | | ||||| |||||||| | ||||| |||||||||||
Sbjct 53239 ATATCGCATTAACATAAACGCATCTGCCAAACCCTGCACTCCAATACC 53286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712907397609600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |