Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2581 113 6e-20 seq3007 104 3e-17 seq2783 96.9 5e-15 >seq2581 Length=3237177 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 |||||||||||||||||| ||||| || || || || || || |||||||| | |||||| Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576 Query 46980 AGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACT 47039 | || | ||| ||| || |||| |||| || || ||||| || ||||||||| Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084 ||||||||| || ||||| ||||| ||||| ||| | || || Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471 >seq3007 Length=2871884 Score = 104 bits (114), Expect = 3e-17 Identities = 189/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 ||| || || ||||| || |||| || | || ||||| || || || || ||||| Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 77026 AGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 || || || ||| || || ||| || |||||||| ||| || || || || || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 |||||| || ||||| || | ||||||||| || || |||| ||| || || | || Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | |||||||| | || |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 |||| || || || ||| | || | ||||| || Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 75704 AGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTG 75763 ||||| |||||||| || ||||| || |||||||| | || ||||||||| || Sbjct 1591673 AGATGCGGATTAACGATGATGAATTCCCCGGACAATACGCGTCTCACGTAAATATTGCTC 1591614 Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 || |||| || | ||||| |||||||| | ||| || || || ||||| ||||||||| Sbjct 1591613 GTGTATGCCTCGATGGATTCGTTGTTTCCGAGAATCTGCGCCGTGGAAGCCGTCGGCATA 1591554 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 75883 ||||| | || | |||||| | ||||| | ||| | |||| | | | | Sbjct 1591553 GGTGCTATTAAAAGCGAATTTCTCACTCCATGCTCTGCGATCTCTGCTTTCAACTTGTCC 1591494 Query 75884 CAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||||| | ||||| || || | ||| | ||| ||||| || || Sbjct 1591493 CAATCCCACAAATCTGTCGGCTTGACGTTCCACATATCATATTGGAGGAT 1591444 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || ||||| ||| |||||||||||| | || || ||| |||||| ||| Sbjct 1590572 GTATACAATTCTTTAAATTTATCACCCCAAACATCAGCTAAGCCGGGAGATTCATAAGGA 1590513 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| |||| |||| | | || |||| |||||| ||||| |||||||| Sbjct 1590512 CACATCAAGCTCCACATCTCATCATTGTACACACGTTCCATAAAAAGATCTGGTATCCAC 1590453 Query 76628 AGAGCAATAAATAGATCTC 76646 ||| || ||||| |||| Sbjct 1590452 AGACCATAAAATAAGTCTC 1590434 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| ||| |||||||||| || |||||| | ||||||| ||||||||| || Sbjct 1592012 TCCAACCGAAGAAATGCATCGACGTAAGTTTGTCACGTGTCGGATCATCTATATGAACAT 1591953 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| || || |||||||||||||| |||| ||| |||||||||| | ||| | Sbjct 1591952 TCAGGGATTGCGACTGATCGATGAAAGCCCCTCGATCGGCCGCCATTTCGAGAATTACTT 1591893 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || || || ||||| | |||||| | | ||| | |||||| |||| Sbjct 1591892 TCTGCGGTATCTCCCATACAGTTTTATAGAGCATTTTCAAATCATCGGGAA 1591842 >seq2783 Length=2925630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 || ||||||||||||||| || | || ||||| | ||| |||| || ||||| ||||| Sbjct 53119 ATGATATGTTTCGTAAGTGCCTTTTTTCTCAGCCAACTCGAAACTGGCTTCTAAGGCACC 53178 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 | |||| || ||||| || || | || || || | |||||| ||||| || || Sbjct 53179 AAAGTAAAGCGTCTCGAAGATTTTGATGTTGAGCTCCTTCGCTTCTTTGCTATCGAACGG 53238 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 ||| | | | ||||| |||||||| | ||||| ||||||||||| Sbjct 53239 ATATCGCATTAACATAAACGCATCTGCCAAACCCTGCACTCCAATACC 53286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907397609600