Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3008 138 3e-27 seq2987 116 9e-21 seq2856 95.1 3e-14 >seq3008 Length=1134530 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| || | ||| | |||||| || || |||||||||||||||| ||||| | Sbjct 388551 AGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGA 388610 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| ||||| || || | | |||||| || | | || || || Sbjct 388611 CCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCT 388670 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| |||| | | || ||| || ||||||||||| Sbjct 388671 TTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTT 388730 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || | |||||||| |||| ||||||| Sbjct 388731 ATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || |||||||| ||||||||||||| | |||| |||||||| || Sbjct 387422 ATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCATCTTCAAGTTG 387481 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| |||| | ||||||||| || ||||||||||| Sbjct 387482 TTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGAATTTT 387541 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| |||| | | ||||| ||| ||||| | || || ||||| || || Sbjct 387542 AGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTTTCCCTGT 387601 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || ||||| | ||||||| Sbjct 387602 TAGAGTTTTGACGAAAATCTGCATT 387626 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || |||||||| || |||||||| | | |||| |||||||| || Sbjct 387881 ATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCGAGTTG 387940 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | ||| || |||| | |||||||||||| || |||||||| Sbjct 387941 TTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTGAATTTT 388000 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||||| |||| | ||||||| ||| ||||| | ||| || ||||| || || Sbjct 388001 TGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTTTCCTGT 388060 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || | ||||| Sbjct 388061 AAGAGTTTTCACAAAAATTTGCAT 388084 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| || | ||| | |||||| || || ||||| |||||||| | ||||| | Sbjct 388323 AGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGA 388382 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | |||||||| |||| | ||| ||||| Sbjct 388383 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCT 388442 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||| || ||| |||| | ||||||| || ||||| | || Sbjct 388443 TTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTT 388502 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || | || || ||||| | ||||||| Sbjct 388503 ATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| || || |||||||||| | || | || ||||| || Sbjct 388109 ATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCAAGCTG 388168 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | |||||| |||| | ||| || || || ||||||||||| Sbjct 388169 TTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTGAATTTT 388228 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || || |||| | | ||||| || ||||| | ||||| || || || || Sbjct 388229 TGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTTCCTGT 388288 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| | |||||| Sbjct 388289 TAGAGTTTTGACGAAAATCTGCAT 388312 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| ||||| || ||||| || ||||| || | |||||| | ||||| Sbjct 387186 AGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCCATCC 387245 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || || || || || || | | || || || || ||| Sbjct 387246 TCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCT 387305 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || || |||| | | | || ||| ||| ||||| | ||||| || Sbjct 387306 TGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAATCGTC 387365 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||| | |||||| Sbjct 387366 TTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 >seq2987 Length=818656 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || || ||||||||||| ||||| | | |||||| || ||||| | Sbjct 733317 ATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTG 733258 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || |||||||| || | |||||| || | | || || || || ||||| || || Sbjct 733257 TTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTT 733198 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | |||| |||| ||| || || ||||| || |||||||| || || Sbjct 733197 GGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGT 733138 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||||||| |||| ||||| Sbjct 733137 GAGGGTCTTCACAAAGATTTGCAT 733114 >seq2856 Length=4748033 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||||||||| || ||||| | | ||| | |||||||| || || || ||||||| Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 |||| | |||||| || | | ||||| || || || || || || ||| ||| | | Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||| | || || ||||| || || |||||||| || |||||||| || || |||| Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 152095 AGACCTGCAT 152104 | | |||||| Sbjct 1620883 AAATCTGCAT 1620874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153776006513130