Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2987 131 1e-25 seq3008 109 4e-19 seq2856 98.7 7e-16 >seq2987 Length=818656 Score = 131 bits (144), Expect = 1e-25 Identities = 175/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | ||| |||| || || ||| |||||||||||||| || Sbjct 733347 TTGCATTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATA 733288 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| | ||||| || |||| |||| || || || || ||||||| |||||||||| Sbjct 733287 ATCTGAAAGAGTTCT-GC-CGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGA 733230 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | ||| | || || || || ||||| || | || |||| ||||| | Sbjct 733229 TCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAA 733170 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||||||||| | || || || ||||| |||||||||||||| ||||||||||||||| Sbjct 733169 GCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCATGATG 733110 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | || ||||||||||| ||| |||||||| ||||| || || Sbjct 733572 CATTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTC 733513 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || ||||| || || ||||| || |||| |||||||||||| Sbjct 733512 TGAAAGAGTTCT-GC-CATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCA 733455 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | |||||| || ||| || || || | || | || ||||| | | | Sbjct 733454 GGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCT 733395 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| || ||||| ||||| || ||||| || ||||||||||| Sbjct 733394 TCGACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Score = 102 bits (112), Expect = 6e-17 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGC 44177 |||| ||| |||| ||| |||||| |||||||| ||||| || || | ||||| Sbjct 733787 AGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCT- 733729 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 || | || ||||| || || ||||| || |||| ||| |||||||| | ||| | ||||| Sbjct 733728 GC-CATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTT 733670 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACC 44296 | || ||| || || |||| | ||| | || ||||||| | ||| || || | Sbjct 733669 CTTTGTCCTGGATTTTG-GCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGT 733611 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || ||||| || ||||||||||| ||||| Sbjct 733610 GTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 >seq3008 Length=1134530 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || || |||||||||| ||| ||| |||| || ||||| || ||||||||| Sbjct 388122 TCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAG 388181 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||||||||| | ||| | || | |||| | | | || ||| | || ||| Sbjct 388182 ATCAAACGCTGCTGATCCGGAGGGATGCCCT-CTTTGTCTTGAATTTTTGCCTTAACGTT 388240 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | ||| || || | |||||| |||||||| || || || || || Sbjct 388241 CTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGAC 388300 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 388301 GAAAATCTGCAT 388312 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || || || ||||| || | ||| ||||||||||| || ||||| Sbjct 387623 CATTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATC 387682 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | |||| |||| ||||| ||||| || ||||| ||||||||||||||||| | Sbjct 387683 AGACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGG 387742 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| || || || ||||| |||| | ||| | || || || | || | Sbjct 387743 TGGGATACCCTCTTTATCTTGAATCTT-GGCTTTTACATTCTCAATAGTATCAGAAGACT 387801 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||| || || || || || || || || ||||| || ||||| Sbjct 387802 CGACTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || ||||| || | ||||| ||| || ||||| || |||||||| | ||| || Sbjct 387867 AGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGA 387926 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || |||||||||||||||||||| ||||| | ||| | |||||| Sbjct 387927 CCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCC 387986 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || ||| | | || ||| | | |||| | || ||||| | | || || || | || Sbjct 387987 TTGTCC-TGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGT 388045 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || || || ||||| || |||||||| Sbjct 388046 GATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||| |||| || || ||| || ||||| ||||||||||| Sbjct 387395 CATACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATC 387454 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || || || || || ||||||||||||||||||||||| | Sbjct 387455 GGAGAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGG 387514 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||| |||| | | | || |||| | ||| | || || || | | | Sbjct 387515 AGGGATTCCTT-CTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCT 387573 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||| || || || || || || || || ||||| || ||||| Sbjct 387574 CAACTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||||| | |||| || | || ||||| |||||||||||||| Sbjct 388538 CATTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATC 388597 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || ||||| || |||||||| ||||||||||||||||| | Sbjct 388598 GGACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGG 388657 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| | |||| | | | || |||| | ||| | || || || | | || Sbjct 388658 TGGAATACCCT-CTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTT 388716 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || || || || || | |||||||| ||||| ||||| Sbjct 388717 CAACTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2856 Length=4748033 Score = 98.7 bits (108), Expect = 7e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 |||||||| || ||||| | || || | || ||||||||||| || || ||||| Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 | ||||||||||| | || | || || || ||| |||||| || | || || Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCT 1620942 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 || || || | ||||| ||||| | ||||| ||||| ||||||||||| || ||||| Sbjct 1620941 ATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAA 1620882 Query 44330 ATTTGCATG 44338 || |||||| Sbjct 1620881 ATCTGCATG 1620873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977106229510