Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3008 105 6e-18 seq2987 89.7 5e-13 seq2856 84.2 2e-11 >seq3008 Length=1134530 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || ||||| || | |||||| || || |||||||| || || ||||| Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||| || ||||| || |||| ||||| || |||| || Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC--GACTCCA 41813 | || ||| ||||| ||| ||||||| | |||| || | ||| || | || | Sbjct 388206 ATGCCCTCTTTGTCT-TGAATTTTTGCCTTAACGTTCTCA-ATTGTATCTGATGCTTCGA 388263 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| || || || || || || || || |||||||||||||| Sbjct 388264 CTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | ||| |||||||||| ||| ||||| || || ||||| || || Sbjct 387627 CCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGAC 387686 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || || ||||| || || || |||| ||||| || || | || Sbjct 387687 AAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGG 387746 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||| || || ||| | || |||| || || ||| || ||||| || Sbjct 387747 ATACCCTCTTTATCT-TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGAC 387805 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || |||||||| || || || || |||||||||||||| Sbjct 387806 TTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||| ||||| || || ||||| ||||| || ||||| || Sbjct 387171 CCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGAT 387230 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||| |||||||| || || ||||| | ||||| || | ||| Sbjct 387231 AAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGA 387290 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | || ||| || || ||| | ||||| | ||| || | | || | ||| || Sbjct 387291 ATGCCCTCTTTATCT-TGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGAC 387349 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || || | || || |||||||||||||| Sbjct 387350 TTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || |||| |||||| ||| || || |||||||| || |||||| Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || || || || || || |||| ||||| || |||| || Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||||| ||| |||| |||| || | | ||| || | ||| || Sbjct 387519 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAAC 387577 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || ||||| || || || || || |||||||||||||| Sbjct 387578 TTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 >seq2987 Length=818656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||| |||||||||||||| || Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || ||||||||||| ||||| ||||| || || | ||| Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| || |||| |||| || | | ||||| | || || Sbjct 733448 ATACCTTCTTTGTCC-TGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || ||||| || |||||||| || || ||||| Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || |||| || |||||| ||||| |||||||||||||| || Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || ||||||||||| ||||| || || || || | ||| Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| || |||| |||| ||| | | |||||| | || || Sbjct 733676 ATACCTTCTTTGTCC-TGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGAC 733618 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || || || ||||| |||||||| Sbjct 733617 TTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 >seq2856 Length=4748033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || || || ||||| || || || || || | || || ||||||||||| ||||| || Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || ||||| || || | |||| | ||| || ||| || | || |||| || | Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCC-TGTATCTTGGCTTTTACATTTTC 1620943 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||| || ||| || ||||| | || || || |||||||| || || |||||||| Sbjct 1620942 TATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAA 1620883 Query 41854 AATCTGCATG 41863 |||||||||| Sbjct 1620882 AATCTGCATG 1620873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286490236000