Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 105 6e-18
seq2987 89.7 5e-13
seq2856 84.2 2e-11
>seq3008
Length=1134530
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || ||||| || | |||||| || || |||||||| || || |||||
Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||| || ||||| || |||| ||||| || |||| ||
Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC--GACTCCA 41813
| || ||| ||||| ||| ||||||| | |||| || | ||| || | || |
Sbjct 388206 ATGCCCTCTTTGTCT-TGAATTTTTGCCTTAACGTTCTCA-ATTGTATCTGATGCTTCGA 388263
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | ||| || || || || || || || || ||||||||||||||
Sbjct 388264 CTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || | ||| |||||||||| ||| ||||| || || ||||| || ||
Sbjct 387627 CCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGAC 387686
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| |||| || || ||||| || || || |||| ||||| || || | ||
Sbjct 387687 AAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGG 387746
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814
| | ||| || || ||| | || |||| || || ||| || ||||| ||
Sbjct 387747 ATACCCTCTTTATCT-TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGAC 387805
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| || |||||||| || || || || ||||||||||||||
Sbjct 387806 TTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||| ||||| || || ||||| ||||| || ||||| ||
Sbjct 387171 CCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGAT 387230
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || ||||| |||||||| || || ||||| | ||||| || | |||
Sbjct 387231 AAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGA 387290
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814
| || ||| || || ||| | ||||| | ||| || | | || | ||| ||
Sbjct 387291 ATGCCCTCTTTATCT-TGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGAC 387349
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || ||||| || || || | || || ||||||||||||||
Sbjct 387350 TTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || | || |||| |||||| ||| || || |||||||| || ||||||
Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || || || || || || || |||| ||||| || |||| ||
Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || ||||| ||| |||| |||| || | | ||| || | ||| ||
Sbjct 387519 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAAC 387577
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||| || ||||| || || || || || ||||||||||||||
Sbjct 387578 TTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
>seq2987
Length=818656
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||| |||||||||||||| ||
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || || || ||||||||||| ||||| ||||| || || | |||
Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || |||||| || |||| |||| || | | ||||| | || ||
Sbjct 733448 ATACCTTCTTTGTCC-TGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||| || || || ||||| || |||||||| || || |||||
Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || || |||| || |||||| ||||| |||||||||||||| ||
Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || || || ||||||||||| ||||| || || || || | |||
Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || |||||| || |||| |||| ||| | | |||||| | || ||
Sbjct 733676 ATACCTTCTTTGTCC-TGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGAC 733618
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || ||||| || || || || || ||||| ||||||||
Sbjct 733617 TTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570
>seq2856
Length=4748033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 134/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
|| || || ||||| || || || || || | || || ||||||||||| ||||| ||
Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794
|| ||||| || || | |||| | ||| || ||| || | || |||| || |
Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCC-TGTATCTTGGCTTTTACATTTTC 1620943
Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
| ||| || ||| || ||||| | || || || |||||||| || || ||||||||
Sbjct 1620942 TATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAA 1620883
Query 41854 AATCTGCATG 41863
||||||||||
Sbjct 1620882 AATCTGCATG 1620873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462286490236000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |