Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq2789 116 4e-21 >seq2789 Length=15484 Score = 116 bits (128), Expect = 4e-21 Identities = 256/377 (68%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 45963 TTTAACATAAGGAG--AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGG 46020 ||| |||||||| | ||| || | ||| | ||| || || ||||| || || Sbjct 3515 TTTTACATAAGGGGCTAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTA 3572 Query 46021 TGAGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACTCCAATTGATTTA 46080 ||| || |||||||| | ||||| || | || || || || ||||||||| Sbjct 3573 TGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGT 3632 Query 46081 GGAGTTTCAATCTGCGCATTACCAAGCTTAAATCCGTTTTCAAGCATTCCTTTTAAATCT 46140 ||||||||||| | ||||| || | ||||| || ||||||||||||||||||||| Sbjct 3633 GGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCA 3692 Query 46141 ACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATCATGCACGTGAATA 46200 ||||| |||||| | ||||| | || |||||||| | |||||| ||||| Sbjct 3693 ACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATT 3752 Query 46201 ATTCCGCTTTCATGCGCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAAT 46253 || ||||||| || ||| | | | | | || | || |||||| ||| Sbjct 3753 TCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATA 3808 Query 46254 GTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTT 46313 |||||||| | |||||||| | | || | ||||||||||| |||| |||||| Sbjct 3809 ATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTT 3868 Query 46314 ATTAGCATTCTCGTTTA 46330 ||||||||| || |||| Sbjct 3869 ATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540151878908520