Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_000866.4
Length=168903
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 116 4e-21
>seq2789
Length=15484
Score = 116 bits (128), Expect = 4e-21
Identities = 256/377 (68%), Gaps = 15/377 (4%)
Strand=Plus/Plus
Query 45963 TTTAACATAAGGAG--AAAGTACTTTATCTACATTCGCAAAAGTCGTTCCGCCGTATTGG 46020
||| |||||||| | ||| || | ||| | ||| || || ||||| || ||
Sbjct 3515 TTTTACATAAGGGGCTAAAATAAT--ATCGATATTGTTAATCGTTGTTCCACCATAAGTA 3572
Query 46021 TGAGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACTCCAATTGATTTA 46080
||| || |||||||| | ||||| || | || || || || |||||||||
Sbjct 3573 TGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGT 3632
Query 46081 GGAGTTTCAATCTGCGCATTACCAAGCTTAAATCCGTTTTCAAGCATTCCTTTTAAATCT 46140
||||||||||| | ||||| || | ||||| || |||||||||||||||||||||
Sbjct 3633 GGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCA 3692
Query 46141 ACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATCATGCACGTGAATA 46200
||||| |||||| | ||||| | || |||||||| | |||||| |||||
Sbjct 3693 ACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATT 3752
Query 46201 ATTCCGCTTTCATGCGCTTTCATAATAAAAGAC----GGGACCAT---ATTTTTGGCAAT 46253
|| ||||||| || ||| | | | | | || | || |||||| |||
Sbjct 3753 TCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTTGGGAAGTATATGATTTTTAGCATA 3808
Query 46254 GTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTT 46313
|||||||| | |||||||| | | || | ||||||||||| |||| ||||||
Sbjct 3809 ATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTT 3868
Query 46314 ATTAGCATTCTCGTTTA 46330
||||||||| || ||||
Sbjct 3869 ATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 540151878908520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |