Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 161 1e-34
>seq12187
Length=3570
Score = 161 bits (178), Expect = 1e-34
Identities = 469/713 (66%), Gaps = 12/713 (2%)
Strand=Plus/Minus
Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837
|||| |||| ||| ||| | ||| || ||||| |||||||||| |||| | || |||
Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678
Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897
||||| || || ||| || || || || || || | ||| ||| ||||| ||
Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618
Query 16898 GCTTC-CTTAATAATACTAGCAACTCGTTCCTCGGAC--GGTGTATGTTTAAGATGTTTA 16954
|| || | || | | | || | || || ||| ||| | || | ||||||
Sbjct 1617 GCCTCACATATGATTTCAAGTATG-CGCTCAC--GACTAGGTTTCTGCACCAAATGTTTG 1561
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
||||||| ||| || || || ||||| || || ||||| | || || || || ||
Sbjct 1560 AACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAG 1501
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
||||||| || ||||| || |||||||| | ||| || || | |||||| |||
Sbjct 1500 AATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCA 1441
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134
||||| |||||||| || | |||||| || || | || || | | | || |
Sbjct 1440 CTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGAT 1381
Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193
|| | || ||||| | |||| || || || | ||| | | || ||||||
Sbjct 1380 TTCG-ATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTC 1322
Query 17194 TATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251
||||| ||||||| | || | || | ||| ||| ||| || || || || |
Sbjct 1321 AATGGCGTTAAATAGAAAATCACGTTGTTTTGT--GTCACGTATGTAGGTGTCAATCAAA 1264
Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311
| |||||||||||| ||||| | || |||||||| || || || || ||||| || ||
Sbjct 1263 ATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGC 1204
Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371
|| || | |||||| ||||| | ||| || || | | |||||| || || |||||
Sbjct 1203 GCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCA 1144
Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431
|| ||||||||||| ||||| | |||| || |||| | || | ||| |
Sbjct 1143 TCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAAT 1084
Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484
|||||| || | ||| ||| ||| ||||||||| || ||||||||
Sbjct 1083 TTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517344734083320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |