Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12187 161 1e-34 >seq12187 Length=3570 Score = 161 bits (178), Expect = 1e-34 Identities = 469/713 (66%), Gaps = 12/713 (2%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 |||| |||| ||| ||| | ||| || ||||| |||||||||| |||| | || ||| Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || ||| || || || || || || | ||| ||| ||||| || Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618 Query 16898 GCTTC-CTTAATAATACTAGCAACTCGTTCCTCGGAC--GGTGTATGTTTAAGATGTTTA 16954 || || | || | | | || | || || ||| ||| | || | |||||| Sbjct 1617 GCCTCACATATGATTTCAAGTATG-CGCTCAC--GACTAGGTTTCTGCACCAAATGTTTG 1561 Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 ||||||| ||| || || || ||||| || || ||||| | || || || || || Sbjct 1560 AACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAG 1501 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 ||||||| || ||||| || |||||||| | ||| || || | |||||| ||| Sbjct 1500 AATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCA 1441 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| |||||||| || | |||||| || || | || || | | | || | Sbjct 1440 CTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGAT 1381 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 || | || ||||| | |||| || || || | ||| | | || |||||| Sbjct 1380 TTCG-ATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTC 1322 Query 17194 TATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 ||||| ||||||| | || | || | ||| ||| ||| || || || || | Sbjct 1321 AATGGCGTTAAATAGAAAATCACGTTGTTTTGT--GTCACGTATGTAGGTGTCAATCAAA 1264 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | |||||||||||| ||||| | || |||||||| || || || || ||||| || || Sbjct 1263 ATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGC 1204 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | |||||| ||||| | ||| || || | | |||||| || || ||||| Sbjct 1203 GCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCA 1144 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || ||||||||||| ||||| | |||| || |||| | || | ||| | Sbjct 1143 TCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAAT 1084 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 |||||| || | ||| ||| ||| ||||||||| || |||||||| Sbjct 1083 TTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517344734083320