Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq12187 136 4e-27 seq9465 87.8 2e-12 >seq12187 Length=3570 Score = 136 bits (150), Expect = 4e-27 Identities = 459/703 (65%), Gaps = 20/703 (3%) Strand=Plus/Minus Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 ||| | ||| || ||||| |||||||||| | |||| | | |||||| || || || || Sbjct 1723 TAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAG 1664 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || || || || | || | ||| | ||||||||| || || || ||||| Sbjct 1663 ATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGAT 1604 Query 16150 ATCG-GTG-GCTCGTGTTTCA-GAC--GGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 || || || | ||| ||| ||| | || | ||||| ||||| | ||| Sbjct 1603 TTCAAGTATGCGC-----TCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAG 1549 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || ||||| ||||| | |||||||| | || || || ||||| || || | || Sbjct 1548 GCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCA 1489 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATA 16322 ||||| || |||||||| | |||||| || | || || || | | ||| ||| | Sbjct 1488 GGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAA--GAAAA 1431 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA- 16381 |||||||||||| |||||| || || | || || | | | || ||| | || Sbjct 1430 TACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCG-ATGAG 1372 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| | |||| || || || | || | | | || |||||| ||||| ||| Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTA 1312 Query 16442 AACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 || | | || | || | || | || ||| || || ||||||| | ||||||| Sbjct 1311 AATAGAAAATCACGTTGTTTTGTGTCACG--TATGTAGGTGTCAATCAAAATGCTGTACA 1254 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| ||||| | || || ||||| || || || ||||| || || || ||||| | || Sbjct 1253 TTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTA 1194 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 |||||||||| | || || || ||| || ||||| || || || ||| || | Sbjct 1193 TTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGG 1134 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 | ||||| ||||| | ||| || |||| | || | | ||| | | | ||| | Sbjct 1133 CGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGT 1074 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | || | ||| ||| ||| ||||||||| || |||||||| Sbjct 1073 CATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAA 1031 >seq9465 Length=7312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/278 (67%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| ||||| || ||||| || | | || |||| || || || | || Sbjct 6608 TTCATGTAACGTATTTTACCAAAAACTGCTCTTTCACCCCATCCTTGATCATGTATGCCA 6549 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | ||| | ||| || || | || || ||||| | ||||| | | | ||||| Sbjct 6548 CAAATCGACCACATACAACCAACAAAACCATTAGGATCACTGCCGTCCAGCGCATACTTG 6489 Query 119056 TCGTTTAAGTAGATACAGACGCTT---AACGCACTTTCCGGAGTCTTACTCCATTCCAGT 119112 || || || ||||| | | || || || | || ||| | | |||||| ||| Sbjct 6488 TCATTCAAATAGAT---GGCAATTTCCAAAGCTTTCTCTGGACTTTCCGACCATTCTAGT 6432 Query 119113 AtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172 |||||||||||||| ||||| || | | | || |||||||||||||| | ||| ||| Sbjct 6431 ATTTTTTTAGCCCAATACATGCGCATAAAACCATGCATTTTACCCTCCCTTTTCAACTGT 6372 Query 119173 AGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGC 119210 | |||||| | ||||||| | |||||||| || || Sbjct 6371 ATTTGTGCTGCATTCCATAAATCCTCGTGTGTGCGCGC 6334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511215913678680