Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 136 4e-27
seq9465 87.8 2e-12
>seq12187
Length=3570
Score = 136 bits (150), Expect = 4e-27
Identities = 459/703 (65%), Gaps = 20/703 (3%)
Strand=Plus/Minus
Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089
||| | ||| || ||||| |||||||||| | |||| | | |||||| || || || ||
Sbjct 1723 TAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAG 1664
Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149
|| || || || | || | ||| | ||||||||| || || || |||||
Sbjct 1663 ATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGAT 1604
Query 16150 ATCG-GTG-GCTCGTGTTTCA-GAC--GGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204
|| || || | ||| ||| ||| | || | ||||| ||||| | |||
Sbjct 1603 TTCAAGTATGCGC-----TCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAG 1549
Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264
|| ||||| ||||| | |||||||| | || || || ||||| || || | ||
Sbjct 1548 GCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCA 1489
Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATA 16322
||||| || |||||||| | |||||| || | || || || | | ||| ||| |
Sbjct 1488 GGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAA--GAAAA 1431
Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA- 16381
|||||||||||| |||||| || || | || || | | | || ||| | ||
Sbjct 1430 TACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCG-ATGAG 1372
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441
||||| | |||| || || || | || | | | || |||||| ||||| |||
Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTA 1312
Query 16442 AACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499
|| | | || | || | || | || ||| || || ||||||| | |||||||
Sbjct 1311 AATAGAAAATCACGTTGTTTTGTGTCACG--TATGTAGGTGTCAATCAAAATGCTGTACA 1254
Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559
|||| ||||| | || || ||||| || || || ||||| || || || ||||| | ||
Sbjct 1253 TTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTA 1194
Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619
|||||||||| | || || || ||| || ||||| || || || ||| || |
Sbjct 1193 TTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGG 1134
Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679
| ||||| ||||| | ||| || |||| | || | | ||| | | | ||| |
Sbjct 1133 CGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGT 1074
Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722
| || | ||| ||| ||| ||||||||| || ||||||||
Sbjct 1073 CATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAA 1031
>seq9465
Length=7312
Score = 87.8 bits (96), Expect = 2e-12
Identities = 187/278 (67%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| ||||| || ||||| || | | || |||| || || || | ||
Sbjct 6608 TTCATGTAACGTATTTTACCAAAAACTGCTCTTTCACCCCATCCTTGATCATGTATGCCA 6549
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055
| | ||| | ||| || || | || || ||||| | ||||| | | | |||||
Sbjct 6548 CAAATCGACCACATACAACCAACAAAACCATTAGGATCACTGCCGTCCAGCGCATACTTG 6489
Query 119056 TCGTTTAAGTAGATACAGACGCTT---AACGCACTTTCCGGAGTCTTACTCCATTCCAGT 119112
|| || || ||||| | | || || || | || ||| | | |||||| |||
Sbjct 6488 TCATTCAAATAGAT---GGCAATTTCCAAAGCTTTCTCTGGACTTTCCGACCATTCTAGT 6432
Query 119113 AtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172
|||||||||||||| ||||| || | | | || |||||||||||||| | ||| |||
Sbjct 6431 ATTTTTTTAGCCCAATACATGCGCATAAAACCATGCATTTTACCCTCCCTTTTCAACTGT 6372
Query 119173 AGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGC 119210
| |||||| | ||||||| | |||||||| || ||
Sbjct 6371 ATTTGTGCTGCATTCCATAAATCCTCGTGTGTGCGCGC 6334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511215913678680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |