Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 361 6e-95
seq4853 325 5e-84
seq12187 264 1e-65
>seq2021
Length=2943
Score = 361 bits (400), Expect = 6e-95
Identities = 963/1469 (66%), Gaps = 43/1469 (3%)
Strand=Plus/Minus
Query 52802 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 52861
|||| || ||||| || | | || || || ||||| || | ||| ||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 52862 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCT 52921
|| | || |||| ||||| ||||| || ||| ||||| |||| |||| ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981
|| | ||| || || | |||||||||||||| || || || || | || || ||||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970
Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 53040
|| || |||||| | ||| ||||||| || || || || || | | || |
Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910
Query 53041 TGGAA--GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCA 53098
| | | | |||| || || ||||||| || ||||| ||| || || |||
Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850
Query 53099 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 53158
|||| ||||| | |||||| ||| | | || | ||| |||| || || || |||
Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790
Query 53159 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 53218
|| ||||||||||| | || || || |||||| ||||| || || | ||| ||||||
Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730
Query 53219 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 53278
|| |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| |
Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670
Query 53279 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 53336
| || ||||| | ||||| || || || |||||||||| ||||| | |||
Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612
Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 53396
|||| ||| || || ||| | ||| || |||| || |
Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552
Query 53397 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 53433
| || || || ||| ||||||||| | ||||| || ||
Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492
Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 53493
|| || ||||| |||||||| ||||| || || | | |||||| | |||||||
Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432
Query 53494 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553
|| ||| |||||||| | ||| || || || ||||| |||||||| || ||||||||
Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372
Query 53554 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 53613
|| || | ||| | | |||| || | || || || | || || ||||| || ||
Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312
Query 53614 TATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 53670
||| ||||| || | || | | |||||| || | || || || ||||| |||
Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255
Query 53671 ATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAA 53726
|||| | ||||| | | |||||||| || | |||||| || || | ||||||||
Sbjct 1254 ATCATAAGTCTTGTCTGGGT-TGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAA 1196
Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786
| || | |||| | ||| ||||| || || |||||||| | ||| || |||||||
Sbjct 1195 CAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGA 1136
Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846
| || |||| ||| |||||||||||||| ||||| ||||||||||| || || |||
Sbjct 1135 TAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATG 1076
Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906
| || |||||||| | ||| | |||||||| || ||| | | |||| || |
Sbjct 1075 GAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAG 1016
Query 53907 T-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965
| |||| | | | ||| | || ||| ||| | | | || || || || |||
Sbjct 1015 TGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCC 957
Query 53966 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 54025
||||| | | | ||| || || | | || ||||| | ||||| || || || ||
Sbjct 956 CAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCC 897
Query 54026 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 54085
| ||| |||||||| || | || || ||||| ||||| ||||| ||||| | | |
Sbjct 896 TCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGA 837
Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145
| || || || || ||||| || || | ||| | ||| | | ||||| || |||||
Sbjct 836 TACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAG 777
Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205
||||| || || |||| | | || || |||||| ||||||||||| | ||| |
Sbjct 776 GGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGC 717
Query 54206 GCGGTGTTATTATAAACTCTCAACATTGG 54234
|| |||||| | || | || ||| ||
Sbjct 716 GCCACGTTATTGAACACACGCAGCATAGG 688
>seq4853
Length=2014
Score = 325 bits (360), Expect = 5e-84
Identities = 862/1306 (66%), Gaps = 19/1306 (1%)
Strand=Plus/Plus
Query 53357 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416
|||| ||| || || ||| | || || |||| || || || || || |||||||
Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203
Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476
|| | ||||| || || || || ||||| |||||||| ||||| || || | | ||||
Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263
Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536
|| | ||||||| || ||| |||||||| | ||| || || || ||||| |||
Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323
Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596
||||| || |||||||| || || | ||| | | |||| || | || || || |
Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383
Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACA 53653
|| || ||||| || ||||| ||||| || | || | | |||||| || | ||
Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440
Query 53654 TCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAAT 53709
|| || ||||| ||||||| | ||||| | | |||||||| || | ||||||
Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGT-TGACAAACATATTGAGTGCAAT 499
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
|| || | ||||||||| || | |||| | ||| ||||| || || ||||||||
Sbjct 500 TGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCA 559
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
| ||| || |||||||| || |||| ||| |||||||||||||| ||||| |||||
Sbjct 560 TAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATC 619
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
|||||| || || |||| || |||||||| | || | |||||||| || ||| |
Sbjct 620 CTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAA 679
Query 53890 GACACGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 53948
| |||| || | | |||| | | | ||| | || ||| ||| | |
Sbjct 680 GGTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTT 738
Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 54008
| || || || || |||||||| | | | ||| || || | | || ||||| | |
Sbjct 739 GCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTG 798
Query 54009 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 54067
|||| || || || ||| ||| |||||||| || | || || ||||| ||||| |||
Sbjct 799 ACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAG 857
Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127
|||| ||||| | | || || || || || ||||| || || | ||| | ||| |
Sbjct 858 AATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCA 917
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187
| ||||| || ||||| |||||||| || |||| | | || || |||||| |||
Sbjct 918 AATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCT 977
Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247
|||||||| | ||| | || |||||| | || | || ||| || | | ||||||
Sbjct 978 CCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTA 1037
Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 54305
|| | ||||| || || | || | || |||| || || | | | ||| |
Sbjct 1038 GAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CA 1095
Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365
| || || || ||||| || ||||| | |||||| | | || | | | || |
Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATAC 1155
Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425
|||| || ||| | | ||| | || || |||||| |||| ||| | || || |
Sbjct 1156 CCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTG 1215
Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485
| | ||| |||| || ||||| ||||| ||||| | || || |||| |||||
Sbjct 1216 TGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGT 1275
Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545
| || || || || | || |||||| || || || || || |||||||| | |
Sbjct 1276 AGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTA 1335
Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605
|| ||||| | || || || | || ||||||| || ||||| ||| | |
Sbjct 1336 GATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTG 1395
Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
| || || || || || || || |||||| || || ||||||||
Sbjct 1396 TCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831
|||| |||||| ||||||||||||| ||| || || || |||||||| || | ||| ||
Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775
Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891
||| |||| ||| ||||| || ||||| || |||| || | || | ||||||||||
Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835
Query 54892 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930
| ||| | |||||| ||| | || | ||||| ||
Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874
>seq12187
Length=3570
Score = 264 bits (292), Expect = 1e-65
Identities = 485/706 (69%), Gaps = 11/706 (2%)
Strand=Plus/Minus
Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 24028
||| || |||||||| |||||| ||| | || |||||||| || || || || ||
Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658
Query 24029 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 24088
|| || || |||| ||||| |||||||| || || || || ||| ||
Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598
Query 24089 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 24148
|| || ||| ||| | || |||||||| ||||||||||| || || || ||
Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538
Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208
|| | || ||||| | ||| | || ||||| || || || || ||||| || ||
Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478
Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268
||| || |||||||| || || || || || ||| |||||||| || || || ||
Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418
Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGAGC 24325
||||| || |||| | || ||| || ||| | | || ||| ||||| ||
Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGC 1358
Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385
|||||| |||||||| || ||| ||||| || || || || ||||| ||| | |
Sbjct 1357 CCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACG 1298
Query 24386 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 24441
|| || | || || |||||| |||||||||| || |||||||| || || |
Sbjct 1297 TTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCA 1242
Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501
||||| ||||| ||||| || || || ||||| | ||||| || || |||||||||
Sbjct 1241 CATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTT 1182
Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561
| || || ||| | ||||||||||| || || || ||| ||| || ||||| ||||
Sbjct 1181 GGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCA 1122
Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 24621
| ||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| |
Sbjct 1121 AAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCT 1062
Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667
| ||| ||||||||| ||||||||||||||||| || || |||||
Sbjct 1061 TGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593491169225520
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