Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2021 361 6e-95 seq4853 325 5e-84 seq12187 264 1e-65 >seq2021 Length=2943 Score = 361 bits (400), Expect = 6e-95 Identities = 963/1469 (66%), Gaps = 43/1469 (3%) Strand=Plus/Minus Query 52802 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 52861 |||| || ||||| || | | || || || ||||| || | ||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 52862 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCT 52921 || | || |||| ||||| ||||| || ||| ||||| |||| |||| || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 || | ||| || || | |||||||||||||| || || || || | || || |||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 53040 || || |||||| | ||| ||||||| || || || || || | | || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 53041 TGGAA--GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCA 53098 | | | | |||| || || ||||||| || ||||| ||| || || ||| Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 53099 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 53158 |||| ||||| | |||||| ||| | | || | ||| |||| || || || ||| Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790 Query 53159 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 53218 || ||||||||||| | || || || |||||| ||||| || || | ||| |||||| Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730 Query 53219 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 53278 || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| | Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670 Query 53279 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 53336 | || ||||| | ||||| || || || |||||||||| ||||| | ||| Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612 Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 53396 |||| ||| || || ||| | ||| || |||| || | Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552 Query 53397 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 53433 | || || || ||| ||||||||| | ||||| || || Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492 Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 53493 || || ||||| |||||||| ||||| || || | | |||||| | ||||||| Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432 Query 53494 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 || ||| |||||||| | ||| || || || ||||| |||||||| || |||||||| Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372 Query 53554 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 53613 || || | ||| | | |||| || | || || || | || || ||||| || || Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312 Query 53614 TATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 53670 ||| ||||| || | || | | |||||| || | || || || ||||| ||| Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255 Query 53671 ATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAA 53726 |||| | ||||| | | |||||||| || | |||||| || || | |||||||| Sbjct 1254 ATCATAAGTCTTGTCTGGGT-TGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAA 1196 Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 | || | |||| | ||| ||||| || || |||||||| | ||| || ||||||| Sbjct 1195 CAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGA 1136 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 | || |||| ||| |||||||||||||| ||||| ||||||||||| || || ||| Sbjct 1135 TAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATG 1076 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 | || |||||||| | ||| | |||||||| || ||| | | |||| || | Sbjct 1075 GAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAG 1016 Query 53907 T-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965 | |||| | | | ||| | || ||| ||| | | | || || || || ||| Sbjct 1015 TGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCC 957 Query 53966 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 54025 ||||| | | | ||| || || | | || ||||| | ||||| || || || || Sbjct 956 CAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCC 897 Query 54026 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 54085 | ||| |||||||| || | || || ||||| ||||| ||||| ||||| | | | Sbjct 896 TCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGA 837 Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145 | || || || || ||||| || || | ||| | ||| | | ||||| || ||||| Sbjct 836 TACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAG 777 Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205 ||||| || || |||| | | || || |||||| ||||||||||| | ||| | Sbjct 776 GGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGC 717 Query 54206 GCGGTGTTATTATAAACTCTCAACATTGG 54234 || |||||| | || | || ||| || Sbjct 716 GCCACGTTATTGAACACACGCAGCATAGG 688 >seq4853 Length=2014 Score = 325 bits (360), Expect = 5e-84 Identities = 862/1306 (66%), Gaps = 19/1306 (1%) Strand=Plus/Plus Query 53357 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 |||| ||| || || ||| | || || |||| || || || || || ||||||| Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || | ||||| || || || || ||||| |||||||| ||||| || || | | |||| Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 || | ||||||| || ||| |||||||| | ||| || || || ||||| ||| Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| || |||||||| || || | ||| | | |||| || | || || || | Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACA 53653 || || ||||| || ||||| ||||| || | || | | |||||| || | || Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440 Query 53654 TCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAAT 53709 || || ||||| ||||||| | ||||| | | |||||||| || | |||||| Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGT-TGACAAACATATTGAGTGCAAT 499 Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 || || | ||||||||| || | |||| | ||| ||||| || || |||||||| Sbjct 500 TGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCA 559 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 | ||| || |||||||| || |||| ||| |||||||||||||| ||||| ||||| Sbjct 560 TAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATC 619 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 |||||| || || |||| || |||||||| | || | |||||||| || ||| | Sbjct 620 CTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAA 679 Query 53890 GACACGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | |||| || | | |||| | | | ||| | || ||| ||| | | Sbjct 680 GGTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTT 738 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 54008 | || || || || |||||||| | | | ||| || || | | || ||||| | | Sbjct 739 GCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTG 798 Query 54009 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 54067 |||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| Sbjct 799 ACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAG 857 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||||| | | || || || || || ||||| || || | ||| | ||| | Sbjct 858 AATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCA 917 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||||| || ||||| |||||||| || |||| | | || || |||||| ||| Sbjct 918 AATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCT 977 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 |||||||| | ||| | || |||||| | || | || ||| || | | |||||| Sbjct 978 CCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTA 1037 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 54305 || | ||||| || || | || | || |||| || || | | | ||| | Sbjct 1038 GAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CA 1095 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 | || || || ||||| || ||||| | |||||| | | || | | | || | Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATAC 1155 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 |||| || ||| | | ||| | || || |||||| |||| ||| | || || | Sbjct 1156 CCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTG 1215 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | | ||| |||| || ||||| ||||| ||||| | || || |||| ||||| Sbjct 1216 TGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGT 1275 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | || || || || | || |||||| || || || || || |||||||| | | Sbjct 1276 AGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTA 1335 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 || ||||| | || || || | || ||||||| || ||||| ||| | | Sbjct 1336 GATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTG 1395 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | || || || || || || || |||||| || || |||||||| Sbjct 1396 TCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 |||| |||||| ||||||||||||| ||| || || || |||||||| || | ||| || Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 ||| |||| ||| ||||| || ||||| || |||| || | || | |||||||||| Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835 Query 54892 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 | ||| | |||||| ||| | || | ||||| || Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874 >seq12187 Length=3570 Score = 264 bits (292), Expect = 1e-65 Identities = 485/706 (69%), Gaps = 11/706 (2%) Strand=Plus/Minus Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 24028 ||| || |||||||| |||||| ||| | || |||||||| || || || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 24029 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 24088 || || || |||| ||||| |||||||| || || || || ||| || Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598 Query 24089 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 24148 || || ||| ||| | || |||||||| ||||||||||| || || || || Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538 Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 || | || ||||| | ||| | || ||||| || || || || ||||| || || Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||| || |||||||| || || || || || ||| |||||||| || || || || Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGAGC 24325 ||||| || |||| | || ||| || ||| | | || ||| ||||| || Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGC 1358 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 |||||| |||||||| || ||| ||||| || || || || ||||| ||| | | Sbjct 1357 CCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACG 1298 Query 24386 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 24441 || || | || || |||||| |||||||||| || |||||||| || || | Sbjct 1297 TTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCA 1242 Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501 ||||| ||||| ||||| || || || ||||| | ||||| || || ||||||||| Sbjct 1241 CATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTT 1182 Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | || || ||| | ||||||||||| || || || ||| ||| || ||||| |||| Sbjct 1181 GGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCA 1122 Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 24621 | ||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| | Sbjct 1121 AAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCT 1062 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | ||| ||||||||| ||||||||||||||||| || || ||||| Sbjct 1061 TGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593491169225520