Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12187 288 1e-72 >seq12187 Length=3570 Score = 288 bits (318), Expect = 1e-72 Identities = 489/704 (69%), Gaps = 6/704 (1%) Strand=Plus/Plus Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 |||||||| || || || ||||| || ||||| ||||| | | |||||| | || ||| Sbjct 1016 AAGGCCGAAGCTTCATTTTGGACAGTGGAGGAAGTGGATTTATGCAAGGATATGAATGAC 1075 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| |||| || || ||| | ||||| || ||| || |||| ||||||||| Sbjct 1076 TGGGAAAAATTGACAGATAATGAGAGGCATTTTATATCGCATGTTTTGGCATTTTTCGCC 1135 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| || ||||| ||||| || ||| |||| ||||||||| || || || || | Sbjct 1136 GCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATA 1195 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| || || || || || || || |||||||| || |||||||| |||||| Sbjct 1196 ACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATGTGCACTCTGAAATG 1255 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGT--TGA 116951 || | | || ||||| ||| | || | | | || | ||| | | | Sbjct 1256 TACAGCATTTTGATTGACACCTACATACGTGACACAAA--ACAACGTGATTTTCTATTTA 1313 Query 116952 ACGCCATCGAGACGATGCCGTGC-GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 ||||||| || ||| |||| ||| || || ||||||| || ||||| || ||||||| Sbjct 1314 ACGCCATTGAAACGCTGCC-TGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATC 1372 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | | |||| || || ||||| | | || || || || || ||||| | Sbjct 1373 TCATCGAAATCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATT 1432 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| |||||||||||| | || || ||||| |||||||| || |||||||| ||| Sbjct 1433 TTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGC 1492 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 ||||| ||| ||| ||||| || || | ||||| || ||||||| |||||||||||| Sbjct 1493 CTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGT 1552 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 ||| ||||||| |||||||||||| ||| || | |||| | || ||| | Sbjct 1553 TTGATGTTCAAACATTTGGTGCAGAAACCTAGTCGTGAGCGCATACTTGAAATCATATGT 1612 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 || || || || || || || ||||| || |||||||| ||| |||| | || Sbjct 1613 GAGGCTGTAAAAATAGAACAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTGGC 1672 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354 | |||||| || ||||| |||| || ||||| || || || Sbjct 1673 ATGAATTGCAAACTTATGTCTGAATATATAGAGTTTGTGGCTGA 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515019236988240