Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 288 1e-72
>seq12187
Length=3570
Score = 288 bits (318), Expect = 1e-72
Identities = 489/704 (69%), Gaps = 6/704 (1%)
Strand=Plus/Plus
Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713
|||||||| || || || ||||| || ||||| ||||| | | |||||| | || |||
Sbjct 1016 AAGGCCGAAGCTTCATTTTGGACAGTGGAGGAAGTGGATTTATGCAAGGATATGAATGAC 1075
Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773
||||| |||| || || ||| | ||||| || ||| || |||| |||||||||
Sbjct 1076 TGGGAAAAATTGACAGATAATGAGAGGCATTTTATATCGCATGTTTTGGCATTTTTCGCC 1135
Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833
||| || ||||| ||||| || ||| |||| ||||||||| || || || || |
Sbjct 1136 GCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATA 1195
Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893
| |||||||| || || || || || || || |||||||| || |||||||| ||||||
Sbjct 1196 ACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATGTGCACTCTGAAATG 1255
Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGT--TGA 116951
|| | | || ||||| ||| | || | | | || | ||| | | |
Sbjct 1256 TACAGCATTTTGATTGACACCTACATACGTGACACAAA--ACAACGTGATTTTCTATTTA 1313
Query 116952 ACGCCATCGAGACGATGCCGTGC-GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010
||||||| || ||| |||| ||| || || ||||||| || ||||| || |||||||
Sbjct 1314 ACGCCATTGAAACGCTGCC-TGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATC 1372
Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070
| | | |||| || || ||||| | | || || || || || ||||| |
Sbjct 1373 TCATCGAAATCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATT 1432
Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130
||||| |||||||||||| | || || ||||| |||||||| || |||||||| |||
Sbjct 1433 TTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGC 1492
Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190
||||| ||| ||| ||||| || || | ||||| || ||||||| ||||||||||||
Sbjct 1493 CTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGT 1552
Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250
||| ||||||| |||||||||||| ||| || | |||| | || ||| |
Sbjct 1553 TTGATGTTCAAACATTTGGTGCAGAAACCTAGTCGTGAGCGCATACTTGAAATCATATGT 1612
Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310
|| || || || || || || ||||| || |||||||| ||| |||| | ||
Sbjct 1613 GAGGCTGTAAAAATAGAACAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTGGC 1672
Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354
| |||||| || ||||| |||| || ||||| || || ||
Sbjct 1673 ATGAATTGCAAACTTATGTCTGAATATATAGAGTTTGTGGCTGA 1716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515019236988240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |