Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9465 262 6e-65 seq26883 86.0 9e-12 >seq9465 Length=7312 Score = 262 bits (290), Expect = 6e-65 Identities = 357/502 (71%), Gaps = 3/502 (1%) Strand=Plus/Minus Query 202744 TTTAATAAATAAATCA---ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCT 202800 |||||||| ||| || ||||||||||| ||| |||| || |||| |||| || | Sbjct 6657 TTTAATAACAAAAGCATTGACATCAAATTTGCGTTTACAGCCAGCATAGTTCATGTAACG 6598 Query 202801 AATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCA 202860 ||||||||||| | || |||||| |||| || |||||| || |||||||| ||||| Sbjct 6597 TATTTTACCAAAAACTGCTCTTTCACCCCATCCTTGATCATGTATGCCACAAATCGACCA 6538 Query 202861 CATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATN 202920 |||||| |||||| | ||||| ||||||| || || | ||| || ||||| |||| Sbjct 6537 CATACAACCAACAAAACCATTAGGATCACTGCCGTCCAGCGCATACTTGTCATTCAAATA 6478 Query 202921 NNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCA 202980 || |||| ||||| || | |||||||| ||||||||||||||| Sbjct 6477 GATGGCAATTTCCAAAGCTTTCTCTGGACTTTCCGACCATTCTAGTATTTTTTTAGCCCA 6418 Query 202981 ATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATT 203040 |||||| | | | | |||||||||||||| | | ||| ||| |||||| |||||| Sbjct 6417 ATACATGCGCATAAAACCATGCATTTTACCCTCCCTTTTCAACTGTATTTGTGCTGCATT 6358 Query 203041 CCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100 |||||||| || || || || | |||| || | ||||| || | | | | Sbjct 6357 CCATAAATCCTCGTGTGTGCGCGCTTCCTCAAATTCCTGCAAACTGTACACAGAAGTGCG 6298 Query 203101 AGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATT 203160 |||| || ||||| |||| ||| ||| || ||||||| | ||||| || || | Sbjct 6297 TTTATCCTTCTTATGATCATCTAGCGTTGTTTGTGCCCAAGCAGCTGCACCCTTGATGCT 6238 Query 203161 ATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTC 203220 ||| |||| |||||| ||| |||||||||||||| | | ||| ||| | ||| || || Sbjct 6237 ATCATAATGTTCATTGTAAAAACAAAAATTATCAGACAACTCTCGACGCACAATTGCCTC 6178 Query 203221 TTCACAAAAAACTTCTACCGAT 203242 |||||||||| |||| || ||| Sbjct 6177 TTCACAAAAAGCTTCCACTGAT 6156 >seq26883 Length=1584 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || || || || ||||| | | ||||| || || || ||||| |||||| | || ||| Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622 Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 || | ||||| || |||||||| || || || ||||||||||| || ||| | || ||| Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682 Query 124764 GGTAT 124768 ||||| Sbjct 683 GGTAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755162798083200