Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq9465 262 6e-65
seq26883 86.0 9e-12
>seq9465
Length=7312
Score = 262 bits (290), Expect = 6e-65
Identities = 357/502 (71%), Gaps = 3/502 (1%)
Strand=Plus/Minus
Query 202744 TTTAATAAATAAATCA---ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCT 202800
|||||||| ||| || ||||||||||| ||| |||| || |||| |||| || |
Sbjct 6657 TTTAATAACAAAAGCATTGACATCAAATTTGCGTTTACAGCCAGCATAGTTCATGTAACG 6598
Query 202801 AATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCA 202860
||||||||||| | || |||||| |||| || |||||| || |||||||| |||||
Sbjct 6597 TATTTTACCAAAAACTGCTCTTTCACCCCATCCTTGATCATGTATGCCACAAATCGACCA 6538
Query 202861 CATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATN 202920
|||||| |||||| | ||||| ||||||| || || | ||| || ||||| ||||
Sbjct 6537 CATACAACCAACAAAACCATTAGGATCACTGCCGTCCAGCGCATACTTGTCATTCAAATA 6478
Query 202921 NNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCA 202980
|| |||| ||||| || | |||||||| |||||||||||||||
Sbjct 6477 GATGGCAATTTCCAAAGCTTTCTCTGGACTTTCCGACCATTCTAGTATTTTTTTAGCCCA 6418
Query 202981 ATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATT 203040
|||||| | | | | |||||||||||||| | | ||| ||| |||||| ||||||
Sbjct 6417 ATACATGCGCATAAAACCATGCATTTTACCCTCCCTTTTCAACTGTATTTGTGCTGCATT 6358
Query 203041 CCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100
|||||||| || || || || | |||| || | ||||| || | | | |
Sbjct 6357 CCATAAATCCTCGTGTGTGCGCGCTTCCTCAAATTCCTGCAAACTGTACACAGAAGTGCG 6298
Query 203101 AGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATT 203160
|||| || ||||| |||| ||| ||| || ||||||| | ||||| || || |
Sbjct 6297 TTTATCCTTCTTATGATCATCTAGCGTTGTTTGTGCCCAAGCAGCTGCACCCTTGATGCT 6238
Query 203161 ATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTC 203220
||| |||| |||||| ||| |||||||||||||| | | ||| ||| | ||| || ||
Sbjct 6237 ATCATAATGTTCATTGTAAAAACAAAAATTATCAGACAACTCTCGACGCACAATTGCCTC 6178
Query 203221 TTCACAAAAAACTTCTACCGAT 203242
|||||||||| |||| || |||
Sbjct 6177 TTCACAAAAAGCTTCCACTGAT 6156
>seq26883
Length=1584
Score = 86.0 bits (94), Expect = 9e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703
|| || || || ||||| | | ||||| || || || ||||| |||||| | || |||
Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622
Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763
|| | ||||| || |||||||| || || || ||||||||||| || ||| | || |||
Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682
Query 124764 GGTAT 124768
|||||
Sbjct 683 GGTAT 687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755162798083200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |