Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq9465 168 1e-36
>seq9465
Length=7312
Score = 168 bits (186), Expect = 1e-36
Identities = 313/457 (68%), Gaps = 2/457 (0%)
Strand=Plus/Plus
Query 189280 AATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTAT 189339
|||||| | |||| | || ||||||||||||| || || ||||||||||||| ||
Sbjct 6183 AATTGTGCGTCGAGAGTTGTCTGATAATTTTTGTTTTTACAATGAACATTATGATAGCAT 6242
Query 189340 CCAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAA 189399
| || | | | | ||||| || ||| |||| ||||| | || ||| | |
Sbjct 6243 CAAGGGTGCAGCTGCTTGGGCACAAACAACGCTAGATGATCATAAGAAGGATAAACGCAC 6302
Query 189400 GTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGC 189459
| | | || | | || | || ||||| || || || | ||||||| ||
Sbjct 6303 TTCTGTGTACAGTTTGCAGGAATTTGAGGAAGCGCGCACACACGAGGATTTATGGAATGC 6362
Query 189460 GTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGC 189519
||||||| ||| || || || || ||||||||| ||||| | || |||||||||||
Sbjct 6363 AGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGCGCATGTATTGGGC 6422
Query 189520 TAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGT-ATCTATT 189578
||| || ||||| |||||| | || || || | |||||| | || | |||||||
Sbjct 6423 TAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAAGCTTTG-GAAATTGCCATCTATT 6481
Query 189579 TGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGT 189638
|||| ||||||| | || ||||||| |||||||| || | || |||||||||||||
Sbjct 6482 TGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTGGTTGTATGTGGT 6541
Query 189639 CTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGAT 189698
| ||||| || |||| ||| || ||| |||||| | | ||||| || ||| | |
Sbjct 6542 CGATTTGTGGCATACATGATCAAGGATGGGGTGAAAGAGCAGTTTTTGGTAAAATACGTT 6601
Query 189699 ATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735
| ||||| |||| | | ||| |||||||||||
Sbjct 6602 ACATGAACTATGCTGGCTGTAAACGCAAATTTGATGT 6638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922838495781960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |