Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq9465 168 1e-36 >seq9465 Length=7312 Score = 168 bits (186), Expect = 1e-36 Identities = 313/457 (68%), Gaps = 2/457 (0%) Strand=Plus/Plus Query 189280 AATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTAT 189339 |||||| | |||| | || ||||||||||||| || || ||||||||||||| || Sbjct 6183 AATTGTGCGTCGAGAGTTGTCTGATAATTTTTGTTTTTACAATGAACATTATGATAGCAT 6242 Query 189340 CCAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAA 189399 | || | | | | ||||| || ||| |||| ||||| | || ||| | | Sbjct 6243 CAAGGGTGCAGCTGCTTGGGCACAAACAACGCTAGATGATCATAAGAAGGATAAACGCAC 6302 Query 189400 GTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGC 189459 | | | || | | || | || ||||| || || || | ||||||| || Sbjct 6303 TTCTGTGTACAGTTTGCAGGAATTTGAGGAAGCGCGCACACACGAGGATTTATGGAATGC 6362 Query 189460 GTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGC 189519 ||||||| ||| || || || || ||||||||| ||||| | || ||||||||||| Sbjct 6363 AGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGCGCATGTATTGGGC 6422 Query 189520 TAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGT-ATCTATT 189578 ||| || ||||| |||||| | || || || | |||||| | || | ||||||| Sbjct 6423 TAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAAGCTTTG-GAAATTGCCATCTATT 6481 Query 189579 TGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGT 189638 |||| ||||||| | || ||||||| |||||||| || | || ||||||||||||| Sbjct 6482 TGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTGGTTGTATGTGGT 6541 Query 189639 CTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGAT 189698 | ||||| || |||| ||| || ||| |||||| | | ||||| || ||| | | Sbjct 6542 CGATTTGTGGCATACATGATCAAGGATGGGGTGAAAGAGCAGTTTTTGGTAAAATACGTT 6601 Query 189699 ATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 | ||||| |||| | | ||| ||||||||||| Sbjct 6602 ACATGAACTATGCTGGCTGTAAACGCAAATTTGATGT 6638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922838495781960