Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 188 7e-43
>seq12187
Length=3570
Score = 188 bits (208), Expect = 7e-43
Identities = 487/732 (67%), Gaps = 20/732 (3%)
Strand=Plus/Minus
Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
|||||||| | | ||| | ||| |||||||| |||||||| | ||| | | ||
Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168
||||| || || | || ||||| | || || || | ||| | || |||||| || ||
Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618
Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAG-GGTTT----AATAAGTGTT 16223
|| ||| || || || || | | || ||| ||||| | || ||||
Sbjct 1617 GCCTCACATATGATTTCAAGTA-TGCGCTC----ACGACTAGGTTTCTGCACCAAATGTT 1563
Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283
| ||||| | ||| ||||| ||||||||||| |||||||| | || | ||| || |
Sbjct 1562 TGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGG 1503
Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343
| ||||| || || ||||| || || ||||| |||| ||| || |||| ||| || |
Sbjct 1502 AGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGC 1443
Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA--CGTTCT 16401
|| ||||| ||||| ||||| || |||||||| | | |||||||| | | |
Sbjct 1442 CACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCG 1383
Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGT 16460
|||| | | ||||| | ||||||| || || | |||||| ||| ||
Sbjct 1382 ATTTCGA--TGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAG-GCAGCG 1326
Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520
| || || || ||||||| | ||| || ||| | || || || || || || |
Sbjct 1325 TTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCA 1266
Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580
| || |||||||| || || | ||| ||||| || || || ||||||||||| || |
Sbjct 1265 AAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAAC 1206
Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640
|| || | |||||||||||| | || | ||| | || ||||| || || || |
Sbjct 1205 GCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGC 1146
Query 16641 CATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698
|||| || || ||||| || || ||| | | ||||||| | || |||||||
Sbjct 1145 CATCAGAGGCGGCGAAAAATGCCAAAACATGCGAT--ATAAAATGCCTCTCATTATCTGT 1088
Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758
| |||| ||||||| | ||| || ||||||| || || || || |||||||| ||
Sbjct 1087 CAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGA 1028
Query 16759 AGCAACAGCCTT 16770
||| | |||||
Sbjct 1027 AGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462332493311400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |