Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12187 188 7e-43 >seq12187 Length=3570 Score = 188 bits (208), Expect = 7e-43 Identities = 487/732 (67%), Gaps = 20/732 (3%) Strand=Plus/Minus Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||||||| | | ||| | ||| |||||||| |||||||| | ||| | | || Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || || | || ||||| | || || || | ||| | || |||||| || || Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAG-GGTTT----AATAAGTGTT 16223 || ||| || || || || | | || ||| ||||| | || |||| Sbjct 1617 GCCTCACATATGATTTCAAGTA-TGCGCTC----ACGACTAGGTTTCTGCACCAAATGTT 1563 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 | ||||| | ||| ||||| ||||||||||| |||||||| | || | ||| || | Sbjct 1562 TGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGG 1503 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 | ||||| || || ||||| || || ||||| |||| ||| || |||| ||| || | Sbjct 1502 AGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGC 1443 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA--CGTTCT 16401 || ||||| ||||| ||||| || |||||||| | | |||||||| | | | Sbjct 1442 CACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCG 1383 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGT 16460 |||| | | ||||| | ||||||| || || | |||||| ||| || Sbjct 1382 ATTTCGA--TGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAG-GCAGCG 1326 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 | || || || ||||||| | ||| || ||| | || || || || || || | Sbjct 1325 TTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCA 1266 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | || |||||||| || || | ||| ||||| || || || ||||||||||| || | Sbjct 1265 AAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAAC 1206 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 || || | |||||||||||| | || | ||| | || ||||| || || || | Sbjct 1205 GCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGC 1146 Query 16641 CATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698 |||| || || ||||| || || ||| | | ||||||| | || ||||||| Sbjct 1145 CATCAGAGGCGGCGAAAAATGCCAAAACATGCGAT--ATAAAATGCCTCTCATTATCTGT 1088 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 | |||| ||||||| | ||| || ||||||| || || || || |||||||| || Sbjct 1087 CAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGA 1028 Query 16759 AGCAACAGCCTT 16770 ||| | ||||| Sbjct 1027 AGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462332493311400